Placeholder image of a protein
Icon representing a puzzle

2296: Electron Density Reconstruction 38 (please try Trim tool)

Closed since almost 3 years ago

Novice Overall Prediction Electron Density

Summary

Created
April 28, 2023
Expires
Max points
100
Description

The structure of this protein has already been solved and published, but close inspection suggests that there are some problems with the published solution. We'd like to see if Foldit players can use the same electron density data to reconstruct a better model. This one has four copies of the protein in it. It's not as gigantic as 2291, but still big enough that the Trim tool will probably be necessary.

Sequence
RPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMKRYQQEILSIDAIKRSSEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFDDVRTNKLQTALNNLKVGYELLDSQK

Top groups

  1. Avatar for Team China 11. Team China 1 pt. 77,272
  2. Avatar for Trinity Biology 12. Trinity Biology 1 pt. 30,566
  1. Avatar for Altercomp 71. Altercomp Lv 1 1 pt. 59,899
  2. Avatar for DipsyDoodle2016 72. DipsyDoodle2016 Lv 1 1 pt. 43,365
  3. Avatar for senhorepi 73. senhorepi Lv 1 1 pt. 32,392
  4. Avatar for hansvandenhof 74. hansvandenhof Lv 1 1 pt. 32,202
  5. Avatar for bpeters5 75. bpeters5 Lv 1 1 pt. 30,742
  6. Avatar for NAUL 76. NAUL Lv 1 1 pt. 30,566
  7. Avatar for SemperRabbit 77. SemperRabbit Lv 1 1 pt. 30,566
  8. Avatar for matt61ger 78. matt61ger Lv 1 1 pt. 30,566
  9. Avatar for Wiz kid 79. Wiz kid Lv 1 1 pt. 30,566
  10. Avatar for alyssa_d_V2.0 80. alyssa_d_V2.0 Lv 1 1 pt. 30,566

Comments

LociOiling Lv 1

This one is a teeny 585 segments, with four chains. Chains A, B, and D are identical, with a length of 146 segments each. Chain C starts out the same, but then adds an extra aspartate (D) at the end, for a length of 147 segements.

The chain view looks like this:

A: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell
B: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell
C: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyelld
D: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell

(We have nothing to fear but feare itself.)

Sandrix72 Lv 1

Wishlist about trim:
1) To have lua command for trim and untrim
2) Possibility to merge two or more trimmed solutions if there is no overlap between them