Placeholder image of a protein
Icon representing a puzzle

212: Mini-CASP 8-Freestyle

Closed since over 16 years ago

Advanced

Summary

Created
October 21, 2009
Expires
Max points
100
Description

Here is the next Mini-CASP target whose solved structure will be released soon. Again we are giving you an extended chain to see what you come up with. This might be difficult since this chain has 149 residues, so we will release Rosetta predictions for this target next week. Until then, good luck freestyle folding! The secondary structure prediction will be posted in the puzzle comments.

Top groups

  1. Avatar for Richard Dawkins Foundation
    1. Richard Dawkins Foundation
    100 pts. 11,150
  2. Avatar for Deleted group 2. Deleted group pts. 10,873
  3. Avatar for Void Crushers 3. Void Crushers 64 pts. 10,844
  4. Avatar for Contenders 4. Contenders 50 pts. 10,604
  5. Avatar for Crunching Family 5. Crunching Family 39 pts. 10,437
  6. Avatar for SETI.Germany 6. SETI.Germany 30 pts. 10,395
  7. Avatar for Origami 2 7. Origami 2 23 pts. 10,343
  8. Avatar for Russian team 8. Russian team 17 pts. 10,293
  9. Avatar for L'Alliance Francophone 9. L'Alliance Francophone 12 pts. 10,283
  10. Avatar for Deleted group 10. Deleted group pts. 10,120
  1. Avatar for Deleted player 31. Deleted player 40 pts. 10,082
  2. Avatar for Steven Pletsch 32. Steven Pletsch Lv 1 39 pts. 10,080
  3. Avatar for Deleted player 33. Deleted player pts. 10,019
  4. Avatar for drbh 34. drbh Lv 1 36 pts. 10,013
  5. Avatar for Lockhart 35. Lockhart Lv 1 35 pts. 10,002
  6. Avatar for Jonathan Braunhut 36. Jonathan Braunhut Lv 1 34 pts. 9,956
  7. Avatar for Ozmandias 37. Ozmandias Lv 1 33 pts. 9,927
  8. Avatar for Goldfish300 38. Goldfish300 Lv 1 31 pts. 9,897
  9. Avatar for xandy 39. xandy Lv 1 30 pts. 9,878
  10. Avatar for Tamison 40. Tamison Lv 1 29 pts. 9,868

Comments

beta_helix Staff Lv 1

The secondary structure sequence logo predictions are still running, but I will post them here as soon as I get them back from the SAM server.
(I think the server queue might be very long right now or something)

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Valine at residue 120 is highly predicted to be part of a helix. However, the Valine at residue 110 is predicted to have an equal probability of being anything.