Placeholder image of a protein
Icon representing a puzzle

212: Mini-CASP 8-Freestyle

Closed since over 16 years ago

Advanced

Summary

Created
October 21, 2009
Expires
Max points
100
Description

Here is the next Mini-CASP target whose solved structure will be released soon. Again we are giving you an extended chain to see what you come up with. This might be difficult since this chain has 149 residues, so we will release Rosetta predictions for this target next week. Until then, good luck freestyle folding! The secondary structure prediction will be posted in the puzzle comments.

Top groups

  1. Avatar for Richard Dawkins Foundation
    1. Richard Dawkins Foundation
    100 pts. 11,150
  2. Avatar for Deleted group 2. Deleted group pts. 10,873
  3. Avatar for Void Crushers 3. Void Crushers 64 pts. 10,844
  4. Avatar for Contenders 4. Contenders 50 pts. 10,604
  5. Avatar for Crunching Family 5. Crunching Family 39 pts. 10,437
  6. Avatar for SETI.Germany 6. SETI.Germany 30 pts. 10,395
  7. Avatar for Origami 2 7. Origami 2 23 pts. 10,343
  8. Avatar for Russian team 8. Russian team 17 pts. 10,293
  9. Avatar for L'Alliance Francophone 9. L'Alliance Francophone 12 pts. 10,283
  10. Avatar for Deleted group 10. Deleted group pts. 10,120
  1. Avatar for mimi 41. mimi Lv 1 28 pts. 9,855
  2. Avatar for Jim Fraser 42. Jim Fraser Lv 1 27 pts. 9,847
  3. Avatar for jobo0502 43. jobo0502 Lv 1 26 pts. 9,832
  4. Avatar for walegretti 44. walegretti Lv 1 25 pts. 9,823
  5. Avatar for olletho 45. olletho Lv 1 24 pts. 9,822
  6. Avatar for minick 46. minick Lv 1 24 pts. 9,809
  7. Avatar for kaworld3 47. kaworld3 Lv 1 23 pts. 9,786
  8. Avatar for Anhaltiner 48. Anhaltiner Lv 1 22 pts. 9,785
  9. Avatar for dedehawk 49. dedehawk Lv 1 21 pts. 9,769
  10. Avatar for kabuki 50. kabuki Lv 1 20 pts. 9,769

Comments

beta_helix Staff Lv 1

The secondary structure sequence logo predictions are still running, but I will post them here as soon as I get them back from the SAM server.
(I think the server queue might be very long right now or something)

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Valine at residue 120 is highly predicted to be part of a helix. However, the Valine at residue 110 is predicted to have an equal probability of being anything.