Placeholder image of a protein
Icon representing a puzzle

246: Mini-CASP 15-Freestyle B

Closed since about 16 years ago

Advanced

Summary

Created
January 13, 2010
Expires
Max points
100
Description

Here is Mini-CASP 15 again, this time with the secondary structure predictions posted in the puzzle comments. Please try to use the secondary structure predictions for this puzzle so that we can compare the results to Freestyle A once the native is released. Thanks!

Top groups

  1. Avatar for Hungary 21. Hungary 1 pt. 8,563
  2. Avatar for Heroines 22. Heroines 1 pt. 8,540
  3. Avatar for BOINC@Poland 23. BOINC@Poland 1 pt. 8,420
  4. Avatar for DSN @ Home 24. DSN @ Home 1 pt. 8,210
  5. Avatar for Deleted group 25. Deleted group pts. 7,913
  6. Avatar for Team China 26. Team China 1 pt. 7,847
  7. Avatar for Rechenkraft.net 27. Rechenkraft.net 1 pt. 0
  1. Avatar for aspadistra 131. aspadistra Lv 1 1 pt. 8,210
  2. Avatar for wil lindner 132. wil lindner Lv 1 1 pt. 8,163
  3. Avatar for Xyaneon 133. Xyaneon Lv 1 1 pt. 8,135
  4. Avatar for arko 134. arko Lv 1 1 pt. 8,124
  5. Avatar for Savas 135. Savas Lv 1 1 pt. 8,124
  6. Avatar for DonDope 136. DonDope Lv 1 1 pt. 8,113
  7. Avatar for JPP 137. JPP Lv 1 1 pt. 8,098
  8. Avatar for jgtate 138. jgtate Lv 1 1 pt. 8,055
  9. Avatar for drbh 139. drbh Lv 1 1 pt. 8,052
  10. Avatar for akinzel 140. akinzel Lv 1 1 pt. 8,027

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 10 is highly predicted to be part of a helix. However, the two Valines at residues 40 and 41 are both predicted to have an equal probability of being in a sheet or loop!