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246: Mini-CASP 15-Freestyle B

Closed since about 16 years ago

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Summary

Created
January 13, 2010
Expires
Max points
100
Description

Here is Mini-CASP 15 again, this time with the secondary structure predictions posted in the puzzle comments. Please try to use the secondary structure predictions for this puzzle so that we can compare the results to Freestyle A once the native is released. Thanks!

Top groups

  1. Avatar for Hungary 21. Hungary 1 pt. 8,563
  2. Avatar for Heroines 22. Heroines 1 pt. 8,540
  3. Avatar for BOINC@Poland 23. BOINC@Poland 1 pt. 8,420
  4. Avatar for DSN @ Home 24. DSN @ Home 1 pt. 8,210
  5. Avatar for Deleted group 25. Deleted group pts. 7,913
  6. Avatar for Team China 26. Team China 1 pt. 7,847
  7. Avatar for Rechenkraft.net 27. Rechenkraft.net 1 pt. 0
  1. Avatar for leprechaun 151. leprechaun Lv 1 1 pt. 7,889
  2. Avatar for Exte 152. Exte Lv 1 1 pt. 7,888
  3. Avatar for Raf-ael 153. Raf-ael Lv 1 1 pt. 7,875
  4. Avatar for tli516 154. tli516 Lv 1 1 pt. 7,854
  5. Avatar for rubixchrist 155. rubixchrist Lv 1 1 pt. 7,848
  6. Avatar for Yi Shen 156. Yi Shen Lv 1 1 pt. 7,847
  7. Avatar for topkat 157. topkat Lv 1 1 pt. 7,847
  8. Avatar for zglloo 158. zglloo Lv 1 1 pt. 7,847
  9. Avatar for milan.mitrovic 159. milan.mitrovic Lv 1 1 pt. 7,846
  10. Avatar for sentausa 160. sentausa Lv 1 1 pt. 7,846

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 10 is highly predicted to be part of a helix. However, the two Valines at residues 40 and 41 are both predicted to have an equal probability of being in a sheet or loop!