Placeholder image of a protein
Icon representing a puzzle

246: Mini-CASP 15-Freestyle B

Closed since about 16 years ago

Advanced

Summary

Created
January 13, 2010
Expires
Max points
100
Description

Here is Mini-CASP 15 again, this time with the secondary structure predictions posted in the puzzle comments. Please try to use the secondary structure predictions for this puzzle so that we can compare the results to Freestyle A once the native is released. Thanks!

Top groups

  1. Avatar for Hungary 21. Hungary 1 pt. 8,563
  2. Avatar for Heroines 22. Heroines 1 pt. 8,540
  3. Avatar for BOINC@Poland 23. BOINC@Poland 1 pt. 8,420
  4. Avatar for DSN @ Home 24. DSN @ Home 1 pt. 8,210
  5. Avatar for Deleted group 25. Deleted group pts. 7,913
  6. Avatar for Team China 26. Team China 1 pt. 7,847
  7. Avatar for Rechenkraft.net 27. Rechenkraft.net 1 pt. 0
  1. Avatar for reed 31. reed Lv 1 42 pts. 9,019
  2. Avatar for Mr_Jolty 32. Mr_Jolty Lv 1 41 pts. 8,969
  3. Avatar for Susanne 33. Susanne Lv 1 39 pts. 8,964
  4. Avatar for caglar 34. caglar Lv 1 38 pts. 8,962
  5. Avatar for philcalhoun 35. philcalhoun Lv 1 37 pts. 8,955
  6. Avatar for tallguy-13088 36. tallguy-13088 Lv 1 36 pts. 8,953
  7. Avatar for aendgraend 37. aendgraend Lv 1 35 pts. 8,952
  8. Avatar for Nicky666 38. Nicky666 Lv 1 33 pts. 8,949
  9. Avatar for jobo0502 39. jobo0502 Lv 1 32 pts. 8,943
  10. Avatar for OmniDude 40. OmniDude Lv 1 31 pts. 8,938

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 10 is highly predicted to be part of a helix. However, the two Valines at residues 40 and 41 are both predicted to have an equal probability of being in a sheet or loop!