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282: Mini-CASP 20 - Quick Freestyle 2

Closed since almost 16 years ago

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Summary

Created
April 04, 2010
Expires
Max points
100
Description

Here is Mini-CASP 20 again, this time with the secondary structure predictions. We want to see how well you can do in just a couple days when starting from an extended chain, before we give you alignments to work with. The secondary structure predictions are posted in the puzzle comments. We hope they help!

Top groups

  1. Avatar for Team New Zealand 11. Team New Zealand 1 pt. 9,515
  2. Avatar for ExPitneyFolders 12. ExPitneyFolders 1 pt. 9,482
  3. Avatar for Deleted group 13. Deleted group pts. 9,415
  4. Avatar for Team Commonwealth 14. Team Commonwealth 1 pt. 8,975
  5. Avatar for Ukraine 15. Ukraine 1 pt. 8,819
  6. Avatar for sfb579 16. sfb579 1 pt. 8,518
  1. Avatar for Merf 61. Merf Lv 1 1 pt. 9,080
  2. Avatar for ourtown 62. ourtown Lv 1 1 pt. 9,079
  3. Avatar for SouperGenious 63. SouperGenious Lv 1 1 pt. 9,053
  4. Avatar for Canada_David 64. Canada_David Lv 1 1 pt. 8,975
  5. Avatar for Nicolien 65. Nicolien Lv 1 1 pt. 8,961
  6. Avatar for sbea3 66. sbea3 Lv 1 1 pt. 8,890
  7. Avatar for leprechaun 67. leprechaun Lv 1 1 pt. 8,884
  8. Avatar for chh9513136 68. chh9513136 Lv 1 1 pt. 8,882
  9. Avatar for Savas 69. Savas Lv 1 1 pt. 8,872
  10. Avatar for Radagast 70. Radagast Lv 1 1 pt. 8,855

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Phenylalanine at residue 120 is highly predicted to be part of a sheet. However, the Lysine at residue 43 is predicted to have an equal probability of being anything.