Placeholder image of a protein
Icon representing a puzzle

282: Mini-CASP 20 - Quick Freestyle 2

Closed since almost 16 years ago

Advanced

Summary

Created
April 04, 2010
Expires
Max points
100
Description

Here is Mini-CASP 20 again, this time with the secondary structure predictions. We want to see how well you can do in just a couple days when starting from an extended chain, before we give you alignments to work with. The secondary structure predictions are posted in the puzzle comments. We hope they help!

Top groups

  1. Avatar for Richard Dawkins Foundation
    1. Richard Dawkins Foundation
    100 pts. 10,649
  2. Avatar for Contenders 2. Contenders 71 pts. 10,361
  3. Avatar for Void Crushers 3. Void Crushers 49 pts. 10,326
  4. Avatar for SETI.Germany 4. SETI.Germany 33 pts. 10,059
  5. Avatar for Natural Abilities 5. Natural Abilities 22 pts. 10,008
  6. Avatar for Crunching Family 6. Crunching Family 14 pts. 10,006
  7. Avatar for Boinc.be 7. Boinc.be 8 pts. 9,966
  8. Avatar for Russian team 8. Russian team 5 pts. 9,939
  9. Avatar for Deleted group 9. Deleted group pts. 9,725
  10. Avatar for L'Alliance Francophone 10. L'Alliance Francophone 2 pts. 9,636
  1. Avatar for Susanne 11. Susanne Lv 1 59 pts. 10,059
  2. Avatar for infjamc 12. infjamc Lv 1 56 pts. 10,019
  3. Avatar for HillObserver 13. HillObserver Lv 1 53 pts. 10,011
  4. Avatar for Mr_Jolty 14. Mr_Jolty Lv 1 50 pts. 10,008
  5. Avatar for philcalhoun 15. philcalhoun Lv 1 47 pts. 10,006
  6. Avatar for Perzik 16. Perzik Lv 1 44 pts. 9,966
  7. Avatar for drjr 17. drjr Lv 1 42 pts. 9,961
  8. Avatar for vakobo 18. vakobo Lv 1 39 pts. 9,939
  9. Avatar for The JIGGLER 19. The JIGGLER Lv 1 37 pts. 9,919
  10. Avatar for aendgraend 20. aendgraend Lv 1 35 pts. 9,907

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Phenylalanine at residue 120 is highly predicted to be part of a sheet. However, the Lysine at residue 43 is predicted to have an equal probability of being anything.