Placeholder image of a protein
Icon representing a puzzle

434: De-novo Freestyle 9

Closed since over 14 years ago

Advanced Overall Prediction

Summary

Created
June 27, 2011
Expires
Max points
100
Description

We are giving you this currently unsolved protein as an extended chain. Use all your skills to fold it up as best as you can. The secondary structure predictions are posted in the puzzle comments, but we have included them in the starting structure as well.

Top groups

  1. Avatar for foldeRNA
    1. foldeRNA
    100 pts. 11,066
  2. Avatar for Void Crushers 2. Void Crushers 85 pts. 10,860
  3. Avatar for Contenders 3. Contenders 71 pts. 10,849
  4. Avatar for Anthropic Dreams 4. Anthropic Dreams 60 pts. 10,816
  5. Avatar for Go Science 5. Go Science 49 pts. 10,659
  6. Avatar for Deleted group 6. Deleted group pts. 10,651
  7. Avatar for L'Alliance Francophone 7. L'Alliance Francophone 33 pts. 10,497
  8. Avatar for Russian team 8. Russian team 27 pts. 10,419
  9. Avatar for Freedom Folders 9. Freedom Folders 22 pts. 10,400
  10. Avatar for SETI.Germany 10. SETI.Germany 17 pts. 10,319
  1. Avatar for rsosborne 21. rsosborne Lv 1 66 pts. 10,632
  2. Avatar for auntdeen 22. auntdeen Lv 1 65 pts. 10,621
  3. Avatar for gdnskye 23. gdnskye Lv 1 63 pts. 10,620
  4. Avatar for BitSpawn 24. BitSpawn Lv 1 62 pts. 10,594
  5. Avatar for cbwest 25. cbwest Lv 1 61 pts. 10,583
  6. Avatar for NinjaGreg 26. NinjaGreg Lv 1 59 pts. 10,577
  7. Avatar for Hanto_FZ140E_4G 27. Hanto_FZ140E_4G Lv 1 58 pts. 10,573
  8. Avatar for foley8 28. foley8 Lv 1 57 pts. 10,522
  9. Avatar for delawarekid 29. delawarekid Lv 1 55 pts. 10,515
  10. Avatar for Bletchley Park 30. Bletchley Park Lv 1 54 pts. 10,499

Comments

beta_helix Staff Lv 1

These secondary structure predictions have been pre-loaded into this freestyle puzzle.

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Leucine at residue 18 is highly predicted to be part of a sheet. However, the Leucines at residue 122-123 are highly predicted to be in a helix.