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444: De-novo Freestyle 11

Closed since over 14 years ago

Advanced Overall Prediction

Summary

Created
August 03, 2011
Expires
Max points
100
Description

We are giving you this currently unsolved protein as an extended chain. Use all your skills to fold it up as best as you can. The secondary structure predictions are posted in the puzzle comments, but we have included them in the starting structure as well.

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    1. foldeRNA
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  2. Avatar for firejuggler 32. firejuggler Lv 1 46 pts. 9,950
  3. Avatar for Mr_Jolty 33. Mr_Jolty Lv 1 45 pts. 9,942
  4. Avatar for cbwest 34. cbwest Lv 1 44 pts. 9,935
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  7. Avatar for gramps 37. gramps Lv 1 40 pts. 9,924
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  10. Avatar for PRL 40. PRL Lv 1 37 pts. 9,917

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Leucine at residue 79 is highly predicted to be part of a helix. However, the Isoleucine at residue 65 has an equal probability of being anything.