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447: De-novo Freestyle 12

Closed since over 14 years ago

Advanced Overall Prediction

Summary

Created
August 16, 2011
Expires
Max points
100
Description

We are giving you this currently unsolved protein as an extended chain. Use all your skills to fold it up as best as you can. The secondary structure predictions are posted in the puzzle comments, but we have included them in the starting structure as well.

Top groups

  1. Avatar for name_in_progress 21. name_in_progress 1 pt. 7,778
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 7,553
  3. Avatar for R12 23. R12 1 pt. 7,514
  4. Avatar for test_group1 24. test_group1 1 pt. 642
  5. Avatar for Freedom Folders 25. Freedom Folders 1 pt. 642
  1. Avatar for Radagast 181. Radagast Lv 1 1 pt. 8,271
  2. Avatar for trinkulo 182. trinkulo Lv 1 1 pt. 8,264
  3. Avatar for 5416000384 183. 5416000384 Lv 1 1 pt. 8,232
  4. Avatar for Folding Fabrics 184. Folding Fabrics Lv 1 1 pt. 8,230
  5. Avatar for Ysabell 185. Ysabell Lv 1 1 pt. 8,123
  6. Avatar for kpsleung 186. kpsleung Lv 1 1 pt. 8,113
  7. Avatar for fiddler6291 187. fiddler6291 Lv 1 1 pt. 8,049
  8. Avatar for g5314402416 188. g5314402416 Lv 1 1 pt. 8,042
  9. Avatar for Protoplasm 189. Protoplasm Lv 1 1 pt. 8,037
  10. Avatar for naha 190. naha Lv 1 1 pt. 7,997

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Leucine at residue 83 is highly predicted to be part of a sheet. However, the Leucine at residue 62 has an equal probability of being anything.