Placeholder image of a protein
Icon representing a puzzle

485: Quick Alignment Puzzle 482

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
November 27, 2011
Expires
Max points
100
Description

This is a quick repost of Puzzle 482: Advanced Alignment Puzzle, but this time we are providing you with secondary structure predictions that are posted in the puzzle comments and included in the starting structure as well. These predictions are from the SAM-T08 server (as requested in the previous puzzle comments: http://fold.it/portal/node/991105). Check out that page for more hints and make sure you beat Intro Puzzles 6-1 through 6-3 before playing this puzzle.

Top groups

  1. Avatar for Contenders
    1. Contenders
    100 pts. 10,659
  2. Avatar for Deleted group 2. Deleted group pts. 10,300
  3. Avatar for foldeRNA 3. foldeRNA 69 pts. 10,283
  4. Avatar for Androids 4. Androids 56 pts. 10,280
  5. Avatar for L'Alliance Francophone 5. L'Alliance Francophone 45 pts. 10,226
  6. Avatar for Anthropic Dreams 6. Anthropic Dreams 36 pts. 10,210
  7. Avatar for Void Crushers 7. Void Crushers 29 pts. 10,199
  8. Avatar for Go Science 8. Go Science 23 pts. 10,162
  9. Avatar for FoldIt@Netherlands 9. FoldIt@Netherlands 18 pts. 10,150
  10. Avatar for Natural Abilities 10. Natural Abilities 14 pts. 10,134
  1. Avatar for nimabine 231. nimabine Lv 1 1 pt. 8,328
  2. Avatar for Sovernigo 232. Sovernigo Lv 1 1 pt. 8,321
  3. Avatar for sp1ralarch1t3ct 233. sp1ralarch1t3ct Lv 1 1 pt. 8,317
  4. Avatar for ThomasJReed 234. ThomasJReed Lv 1 1 pt. 8,314
  5. Avatar for CoachB 235. CoachB Lv 1 1 pt. 8,292
  6. Avatar for HRM Chatzibarbakarapapadopoulos 236. HRM Chatzibarbakarapapadopoulos Lv 1 1 pt. 8,247
  7. Avatar for fatjoe151 237. fatjoe151 Lv 1 1 pt. 8,208
  8. Avatar for darioarena 238. darioarena Lv 1 1 pt. 8,169
  9. Avatar for pemmer77 239. pemmer77 Lv 1 1 pt. 8,120
  10. Avatar for sgsc1 240. sgsc1 Lv 1 1 pt. 8,110

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the two Valines at residues 84 & 86 are highly predicted to be part of a sheet. However, the Valine at residue 9 is predicted to be either part of a loop or sheet.