Placeholder image of a protein
Icon representing a puzzle

485: Quick Alignment Puzzle 482

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
November 27, 2011
Expires
Max points
100
Description

This is a quick repost of Puzzle 482: Advanced Alignment Puzzle, but this time we are providing you with secondary structure predictions that are posted in the puzzle comments and included in the starting structure as well. These predictions are from the SAM-T08 server (as requested in the previous puzzle comments: http://fold.it/portal/node/991105). Check out that page for more hints and make sure you beat Intro Puzzles 6-1 through 6-3 before playing this puzzle.

Top groups

  1. Avatar for Contenders
    1. Contenders
    100 pts. 10,659
  2. Avatar for Deleted group 2. Deleted group pts. 10,300
  3. Avatar for foldeRNA 3. foldeRNA 69 pts. 10,283
  4. Avatar for Androids 4. Androids 56 pts. 10,280
  5. Avatar for L'Alliance Francophone 5. L'Alliance Francophone 45 pts. 10,226
  6. Avatar for Anthropic Dreams 6. Anthropic Dreams 36 pts. 10,210
  7. Avatar for Void Crushers 7. Void Crushers 29 pts. 10,199
  8. Avatar for Go Science 8. Go Science 23 pts. 10,162
  9. Avatar for FoldIt@Netherlands 9. FoldIt@Netherlands 18 pts. 10,150
  10. Avatar for Natural Abilities 10. Natural Abilities 14 pts. 10,134
  1. Avatar for drcliff 251. drcliff Lv 1 1 pt. 7,929
  2. Avatar for Stryve 252. Stryve Lv 1 1 pt. 7,912
  3. Avatar for rakha_rak 253. rakha_rak Lv 1 1 pt. 7,889
  4. Avatar for tokens 254. tokens Lv 1 1 pt. 7,861
  5. Avatar for migueljimenez 255. migueljimenez Lv 1 1 pt. 7,763
  6. Avatar for jimzht6s1 256. jimzht6s1 Lv 1 1 pt. 7,759
  7. Avatar for Primalsoul 257. Primalsoul Lv 1 1 pt. 7,754
  8. Avatar for Feihil 258. Feihil Lv 1 1 pt. 7,754
  9. Avatar for SomeGuyNamedDavid 259. SomeGuyNamedDavid Lv 1 1 pt. 7,753
  10. Avatar for birdy_ssr 260. birdy_ssr Lv 1 1 pt. 7,734

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the two Valines at residues 84 & 86 are highly predicted to be part of a sheet. However, the Valine at residue 9 is predicted to be either part of a loop or sheet.