Placeholder image of a protein
Icon representing a puzzle

508: CASP ROLL Target R0005

Closed since about 14 years ago

Intermediate Overall Prediction

Summary

Created
January 30, 2012
Expires
Max points
100
Description

The fifth CASP ROLL target, R0005, is due in 2 weeks so we are skipping the freestyle puzzle and providing you with server predictions. Luckily this is not a big protein and the Alignment Tool has an extended chain that you can work with (if you don't want to be influenced by the server predictions). Resetting the puzzle will cycle through 10 different server predictions. They are also available in the Alignment Tool so you can use partial threading. The secondary structure prediction are posted in the puzzle comments.

Top groups

  1. Avatar for Go Science
    1. Go Science
    100 pts. 10,090
  2. Avatar for Anthropic Dreams 2. Anthropic Dreams 89 pts. 9,973
  3. Avatar for Contenders 3. Contenders 78 pts. 9,960
  4. Avatar for Void Crushers 4. Void Crushers 69 pts. 9,952
  5. Avatar for Androids 5. Androids 60 pts. 9,945
  6. Avatar for Piratenpartei Deutschland 6. Piratenpartei Deutschland 53 pts. 9,939
  7. Avatar for foldeRNA 7. foldeRNA 46 pts. 9,892
  8. Avatar for xkcd 8. xkcd 40 pts. 9,863
  9. Avatar for L'Alliance Francophone 9. L'Alliance Francophone 34 pts. 9,834
  10. Avatar for HMT heritage 10. HMT heritage 29 pts. 9,827
  1. Avatar for delawarekid 181. delawarekid Lv 1 10 pts. 9,456
  2. Avatar for Ujelet 182. Ujelet Lv 1 9 pts. 9,451
  3. Avatar for Origami314 183. Origami314 Lv 1 9 pts. 9,449
  4. Avatar for jogie62 184. jogie62 Lv 1 9 pts. 9,446
  5. Avatar for weurhartdezirez 185. weurhartdezirez Lv 1 9 pts. 9,446
  6. Avatar for monkry 186. monkry Lv 1 9 pts. 9,439
  7. Avatar for justjustin 187. justjustin Lv 1 9 pts. 9,439
  8. Avatar for Roukess 188. Roukess Lv 1 8 pts. 9,435
  9. Avatar for atlas100 189. atlas100 Lv 1 8 pts. 9,433
  10. Avatar for oscarmichiel 190. oscarmichiel Lv 1 8 pts. 9,433

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 64 is predicted to be part of a sheet or loop. However, the Valine at residue 81 is predicted to be anything.