508: CASP ROLL Target R0005

Closed since about 14 years ago

Summary

• Created: January 30, 2012
• Expires: February 06, 2012 at 19:00 UTC
• Max points: 100

Description

The fifth CASP ROLL target, R0005, is due in 2 weeks so we are skipping the freestyle puzzle and providing you with server predictions. Luckily this is not a big protein and the Alignment Tool has an extended chain that you can work with (if you don't want to be influenced by the server predictions). Resetting the puzzle will cycle through 10 different server predictions. They are also available in the Alignment Tool so you can use partial threading. The secondary structure prediction are posted in the puzzle comments.

Top groups

• 1. Go Science 100 pts. 10,090
• 2. Anthropic Dreams 89 pts. 9,973
• 3. Contenders 78 pts. 9,960
• 4. Void Crushers 69 pts. 9,952
• 5. Androids 60 pts. 9,945
• 6. Piratenpartei Deutschland 53 pts. 9,939
• 7. foldeRNA 46 pts. 9,892
• 8. xkcd 40 pts. 9,863
• 9. L'Alliance Francophone 34 pts. 9,834
• 10. HMT heritage 29 pts. 9,827

Top soloists

• 211. nineteen 6 pts. 9,376
• 212. Radagast 6 pts. 9,373
• 213. BuzzDee 6 pts. 9,370
• 214. Merf 5 pts. 9,368
• 215. neal.reasoner 5 pts. 9,358
• 216. anne romaine 5 pts. 9,352
• 217. tealight 5 pts. 9,351
• 218. MostlyBecca 5 pts. 9,346
• 219. Petrifolder 5 pts. 9,344
• 220. hada 5 pts. 9,338

Comments

[beta_helix]

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 64 is predicted to be part of a sheet or loop. However, the Valine at residue 81 is predicted to be anything.