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550: Pre-CASP blind Alignment Puzzle 2

Closed since almost 14 years ago

Intermediate Overall Prediction

Summary

Created
April 28, 2012
Expires
Max points
100
Description

To prepare for CASP 10 (which begins on May 1st) we want to practice for the Template-Based Modeling category by giving you some blind targets to work on. This template-based target is 102 residues and we are again giving you the top-predicted template from 3 different alignment programs (you'll notice that 2 of them are identical templates, but have different alignments) The secondary structure predictions are posted in the puzzle comments.

Top groups

  1. Avatar for xkcd 21. xkcd 1 pt. 9,301
  2. Avatar for BOINC@Poland 22. BOINC@Poland 1 pt. 9,247
  3. Avatar for Deleted group 23. Deleted group pts. 9,179
  4. Avatar for Piratenpartei Deutschland 24. Piratenpartei Deutschland 1 pt. 9,081
  5. Avatar for St. Mark's School of Texas Folders 25. St. Mark's School of Texas Folders 1 pt. 9,045
  6. Avatar for Androids 26. Androids 1 pt. 8,991
  7. Avatar for Geekdo 27. Geekdo 1 pt. 8,515
  8. Avatar for Czech National Team 28. Czech National Team 1 pt. 8,470
  9. Avatar for Team Germany 29. Team Germany 1 pt. 8,073
  10. Avatar for Team Toombs 30. Team Toombs 1 pt. 8,035
  1. Avatar for enszyme 21. enszyme Lv 1 77 pts. 10,421
  2. Avatar for bertro 22. bertro Lv 1 76 pts. 10,413
  3. Avatar for mimi 23. mimi Lv 1 75 pts. 10,407
  4. Avatar for Timo van der Laan 24. Timo van der Laan Lv 1 74 pts. 10,398
  5. Avatar for ghost-white 25. ghost-white Lv 1 73 pts. 10,396
  6. Avatar for Steven Pletsch 26. Steven Pletsch Lv 1 72 pts. 10,394
  7. Avatar for Mark A 27. Mark A Lv 1 71 pts. 10,383
  8. Avatar for RabidNimravid 28. RabidNimravid Lv 1 70 pts. 10,381
  9. Avatar for auntdeen 29. auntdeen Lv 1 69 pts. 10,375
  10. Avatar for scottyler89 30. scottyler89 Lv 1 68 pts. 10,374

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Phenylalanine at residue 25 is mostly predicted to be part of a sheet. However, the Phenylalanine at residue 51 is predicted to be anything.