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558: CASP10 Target T0668

Closed since almost 14 years ago

Advanced Advanced Overall Overall Prediction Prediction

Summary

Created
May 15, 2012
Expires
Max points
100
Description

Just to warn you: this one is going to be tough! None of the alignment programs were able to find good templates for this target, and it might be the case that this protein has no homologs. Therefore we are giving you 6 templates (in hope that one of them is correct) for now, and will provide you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.

Top groups

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  2. Avatar for Deleted group 22. Deleted group pts. 9,188
  3. Avatar for Team Commonwealth 23. Team Commonwealth 1 pt. 9,129
  4. Avatar for Team China 24. Team China 1 pt. 8,976
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  6. Avatar for CHNO Junkies 26. CHNO Junkies 1 pt. 8,839
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  8. Avatar for Rechenkraft.net 28. Rechenkraft.net 1 pt. 8,499
  9. Avatar for The Knights Who Say Ni! 29. The Knights Who Say Ni! 1 pt. 8,190
  10. Avatar for Dutch Power Cows 30. Dutch Power Cows 1 pt. 7,734
  1. Avatar for ferr606 251. ferr606 Lv 1 1 pt. 8,599
  2. Avatar for CoachB 252. CoachB Lv 1 1 pt. 8,595
  3. Avatar for cherry39 253. cherry39 Lv 1 1 pt. 8,578
  4. Avatar for Marvik Ravonn 254. Marvik Ravonn Lv 1 1 pt. 8,575
  5. Avatar for madan.mx 255. madan.mx Lv 1 1 pt. 8,543
  6. Avatar for rflpaluch 256. rflpaluch Lv 1 1 pt. 8,540
  7. Avatar for arachium 257. arachium Lv 1 1 pt. 8,538
  8. Avatar for aaron_cook 258. aaron_cook Lv 1 1 pt. 8,528
  9. Avatar for sciencenerd13 259. sciencenerd13 Lv 1 1 pt. 8,510
  10. Avatar for KingLear 260. KingLear Lv 1 1 pt. 8,503

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (which has the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=65

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 51 is highly predicted to be in a sheet. However, the Valine at residue 10 is not predicted to be anything.