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558: CASP10 Target T0668

Closed since almost 14 years ago

Advanced Overall Prediction

Summary

Created
May 15, 2012
Expires
Max points
100
Description

Just to warn you: this one is going to be tough! None of the alignment programs were able to find good templates for this target, and it might be the case that this protein has no homologs. Therefore we are giving you 6 templates (in hope that one of them is correct) for now, and will provide you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.

Top groups

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  1. Avatar for Rupawt 331. Rupawt Lv 1 1 pt. 3,794
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  3. Avatar for vnast 333. vnast Lv 1 1 pt. 2,389
  4. Avatar for madeeenn 334. madeeenn Lv 1 1 pt. 0
  5. Avatar for Pindamannetje 335. Pindamannetje Lv 1 1 pt. 0
  6. Avatar for dmasch 336. dmasch Lv 1 1 pt. 0
  7. Avatar for 123you99 337. 123you99 Lv 1 1 pt. 0
  8. Avatar for kalufu 338. kalufu Lv 1 1 pt. 0
  9. Avatar for bigE134 339. bigE134 Lv 1 1 pt. 0
  10. Avatar for Abongo 340. Abongo Lv 1 1 pt. 0

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (which has the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=65

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 51 is highly predicted to be in a sheet. However, the Valine at residue 10 is not predicted to be anything.