573: Advanced CASP10 Refinement Puzzle: TR663

Closed since over 13 years ago

Summary

• Created: June 10, 2012
• Expires: June 16, 2012 at 23:59 UTC
• Max points: 100

Description

This puzzle was closed and reposted as puzzle 573b (identical starting model but with the alignment tool, so you can use the Cut Tool) based on this suggestion: http://fold.it/portal/node/992917#comment-18188 You can manually save any solutions from this puzzle and load them in 573b.

Top groups

• 1. Anthropic Dreams 100 pts. 10,978
• 2. Contenders 52 pts. 10,899
• 3. Go Science 24 pts. 10,789
• 4. foldeRNA 10 pts. 10,626
• 5. Freedom Folders 4 pts. 10,419
• 6. L'Alliance Francophone 1 pt. 10,349
• 7. Void Crushers 1 pt. 10,056
• 8. Deleted group pts. 9,644
• 9. Deleted group pts. 7,377

Top soloists

• 21. bamh 8 pts. 10,289
• 22. cbwest 7 pts. 10,265
• 23. jobo0502 6 pts. 10,229
• 24. gdnskye 5 pts. 10,122
• 25. gramps 4 pts. 10,080
• 26. firejuggler 4 pts. 10,056
• 27. mottiger 3 pts. 10,030
• 28. sbea3 3 pts. 9,954
• 29. heather-1 2 pts. 9,889
• 30. Nighty 2 pts. 9,801

Comments

[beta_helix]

Here is the CASP link for this Refinement target:
http://predictioncenter.org/casp10/target.cgi?id=103&view=refinement
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 32 & 115 are highly predicted to be in a sheet. However, the Leucine at residue 103 is predicted to be in a helix.

[mottiger]

just to improve the handling of the protein you could make an alignment puzzle out of it, so that we can use the cut tool

[beta_helix]

Done: http://fold.it/portal/node/992921

[Rav3n_pl]

make cut tool available on any puzzle :)