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574: CASP10 Target T0709

Closed since almost 14 years ago

Intermediate Intermediate Overall Overall Prediction Prediction

Summary

Created
June 11, 2012
Expires
Max points
100
Description

The ninth CASP10 should be a lot easier, it's only 33 residues. We are giving you the top-predicted templates from 3 different alignment programs and you can see that they are all very similar. Note the short deadline, since this target is so small. More details about this CASP target are in the puzzle comments.

Top groups

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  2. Avatar for Geekdo 22. Geekdo 1 pt. 8,153
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  7. Avatar for Deleted group 27. Deleted group pts. 2,952
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  1. Avatar for dbuske 181. dbuske Lv 1 1 pt. 8,153
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  5. Avatar for guineapig 185. guineapig Lv 1 1 pt. 8,135
  6. Avatar for T_Bones 186. T_Bones Lv 1 1 pt. 8,129
  7. Avatar for Arne Heessels 187. Arne Heessels Lv 1 1 pt. 8,127
  8. Avatar for tkphan 188. tkphan Lv 1 1 pt. 8,121
  9. Avatar for deathbat_87 189. deathbat_87 Lv 1 1 pt. 8,112
  10. Avatar for Fat Tony 190. Fat Tony Lv 1 1 pt. 8,108

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h