Placeholder image of a protein
Icon representing a puzzle

574: CASP10 Target T0709

Closed since almost 14 years ago

Intermediate Overall Prediction

Summary

Created
June 11, 2012
Expires
Max points
100
Description

The ninth CASP10 should be a lot easier, it's only 33 residues. We are giving you the top-predicted templates from 3 different alignment programs and you can see that they are all very similar. Note the short deadline, since this target is so small. More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Go Science
    1. Go Science
    100 pts. 8,587
  2. Avatar for Anthropic Dreams 2. Anthropic Dreams 83 pts. 8,561
  3. Avatar for foldeRNA 3. foldeRNA 69 pts. 8,554
  4. Avatar for Contenders 4. Contenders 56 pts. 8,539
  5. Avatar for Void Crushers 5. Void Crushers 45 pts. 8,518
  6. Avatar for Gargleblasters 6. Gargleblasters 36 pts. 8,516
  7. Avatar for L'Alliance Francophone 7. L'Alliance Francophone 29 pts. 8,514
  8. Avatar for Deleted group 8. Deleted group pts. 8,478
  9. Avatar for FoldIt@Netherlands 9. FoldIt@Netherlands 18 pts. 8,461
  10. Avatar for HMT heritage 10. HMT heritage 14 pts. 8,439
  1. Avatar for dbuske 181. dbuske Lv 1 1 pt. 8,153
  2. Avatar for salish99 182. salish99 Lv 1 1 pt. 8,151
  3. Avatar for DeaconRazorblades 183. DeaconRazorblades Lv 1 1 pt. 8,151
  4. Avatar for alwen 184. alwen Lv 1 1 pt. 8,139
  5. Avatar for guineapig 185. guineapig Lv 1 1 pt. 8,135
  6. Avatar for T_Bones 186. T_Bones Lv 1 1 pt. 8,129
  7. Avatar for Arne Heessels 187. Arne Heessels Lv 1 1 pt. 8,127
  8. Avatar for tkphan 188. tkphan Lv 1 1 pt. 8,121
  9. Avatar for deathbat_87 189. deathbat_87 Lv 1 1 pt. 8,112
  10. Avatar for Fat Tony 190. Fat Tony Lv 1 1 pt. 8,108

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h