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574: CASP10 Target T0709

Closed since almost 14 years ago

Intermediate Overall Prediction

Summary

Created
June 11, 2012
Expires
Max points
100
Description

The ninth CASP10 should be a lot easier, it's only 33 residues. We are giving you the top-predicted templates from 3 different alignment programs and you can see that they are all very similar. Note the short deadline, since this target is so small. More details about this CASP target are in the puzzle comments.

Top groups

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    1. Go Science
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  4. Avatar for damadeo 214. damadeo Lv 1 1 pt. 7,855
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  7. Avatar for pablogalaz 217. pablogalaz Lv 1 1 pt. 7,768
  8. Avatar for cherry39 218. cherry39 Lv 1 1 pt. 7,700
  9. Avatar for birdy_ssr 219. birdy_ssr Lv 1 1 pt. 7,683
  10. Avatar for crawlee34225 220. crawlee34225 Lv 1 1 pt. 7,682

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h