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683: CASP10 Target T0709 Repost

Closed since about 13 years ago

Intermediate Overall Prediction

Summary

Created
March 02, 2013
Expires
Max points
100
Description

We are reposting this 33 residue CASP10 target to try out the new
Disulfide Count Score Filter. We are giving you the top-predicted
templates from 3 different alignment programs and you can see that
they are all very similar. More details about this CASP target are in
the puzzle comments.

Top groups

  1. Avatar for HMT heritage 11. HMT heritage 7 pts. 8,760
  2. Avatar for Deleted group 12. Deleted group pts. 8,758
  3. Avatar for Deleted group 13. Deleted group pts. 8,748
  4. Avatar for SETI.Germany 14. SETI.Germany 3 pts. 8,690
  5. Avatar for Richard Dawkins Foundation 15. Richard Dawkins Foundation 2 pts. 8,667
  6. Avatar for Natural Abilities 16. Natural Abilities 1 pt. 8,661
  7. Avatar for Team Schleswig-Holstein 17. Team Schleswig-Holstein 1 pt. 8,583
  8. Avatar for Davidson College Wildcats 18. Davidson College Wildcats 1 pt. 8,567
  9. Avatar for Piratenpartei Deutschland 19. Piratenpartei Deutschland 1 pt. 8,374
  10. Avatar for Brony@Home 20. Brony@Home 1 pt. 8,281
  1. Avatar for Jajaboman 91. Jajaboman Lv 1 14 pts. 8,608
  2. Avatar for DodoBird 92. DodoBird Lv 1 14 pts. 8,602
  3. Avatar for twisted1 93. twisted1 Lv 1 13 pts. 8,600
  4. Avatar for BootsMcGraw 94. BootsMcGraw Lv 1 13 pts. 8,594
  5. Avatar for Lindata 95. Lindata Lv 1 13 pts. 8,588
  6. Avatar for bamh 96. bamh Lv 1 12 pts. 8,588
  7. Avatar for TheGUmmer 97. TheGUmmer Lv 1 12 pts. 8,584
  8. Avatar for Bithalbierer 98. Bithalbierer Lv 1 12 pts. 8,583
  9. Avatar for Museka 99. Museka Lv 1 11 pts. 8,583
  10. Avatar for weitzen 100. weitzen Lv 1 11 pts. 8,579

Comments

tjbertram Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h