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683: CASP10 Target T0709 Repost

Closed since about 13 years ago

Intermediate Overall Prediction

Summary

Created: March 02, 2013
Expires: March 12, 2013 at 23:00 UTC
Max points: 100

Description

We are reposting this 33 residue CASP10 target to try out the new
Disulfide Count Score Filter. We are giving you the top-predicted
templates from 3 different alignment programs and you can see that
they are all very similar. More details about this CASP target are in
the puzzle comments.

Top groups

11. HMT heritage 7 pts. 8,760
12. Deleted group pts. 8,758
13. Deleted group pts. 8,748
14. SETI.Germany 3 pts. 8,690
15. Richard Dawkins Foundation 2 pts. 8,667
16. Natural Abilities 1 pt. 8,661
17. Team Schleswig-Holstein 1 pt. 8,583
18. Davidson College Wildcats 1 pt. 8,567
19. Piratenpartei Deutschland 1 pt. 8,374
20. Brony@Home 1 pt. 8,281

11. ComputerMage Lv 1 84 pts. 8,817
12. Wilm Lv 1 82 pts. 8,808
13. Bletchley Park Lv 1 80 pts. 8,807
14. grogar7 Lv 1 79 pts. 8,807
15. Mike Cassidy Lv 1 77 pts. 8,804
16. markm457 Lv 1 76 pts. 8,803
17. mimi Lv 1 75 pts. 8,801
18. bob1928 Lv 1 73 pts. 8,795
19. spdenne Lv 1 72 pts. 8,791
20. marie_s Lv 1 70 pts. 8,789

Comments

tjbertram Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
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Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h