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683: CASP10 Target T0709 Repost

Closed since about 13 years ago

Intermediate Overall Prediction

Summary

Created
March 02, 2013
Expires
Max points
100
Description

We are reposting this 33 residue CASP10 target to try out the new
Disulfide Count Score Filter. We are giving you the top-predicted
templates from 3 different alignment programs and you can see that
they are all very similar. More details about this CASP target are in
the puzzle comments.

Top groups

  1. Avatar for HMT heritage 11. HMT heritage 7 pts. 8,760
  2. Avatar for Deleted group 12. Deleted group pts. 8,758
  3. Avatar for Deleted group 13. Deleted group pts. 8,748
  4. Avatar for SETI.Germany 14. SETI.Germany 3 pts. 8,690
  5. Avatar for Richard Dawkins Foundation 15. Richard Dawkins Foundation 2 pts. 8,667
  6. Avatar for Natural Abilities 16. Natural Abilities 1 pt. 8,661
  7. Avatar for Team Schleswig-Holstein 17. Team Schleswig-Holstein 1 pt. 8,583
  8. Avatar for Davidson College Wildcats 18. Davidson College Wildcats 1 pt. 8,567
  9. Avatar for Piratenpartei Deutschland 19. Piratenpartei Deutschland 1 pt. 8,374
  10. Avatar for Brony@Home 20. Brony@Home 1 pt. 8,281
  1. Avatar for nerdyshygirl 261. nerdyshygirl Lv 1 1 pt. 7,680
  2. Avatar for mv127945 262. mv127945 Lv 1 1 pt. 7,671
  3. Avatar for benjy33 263. benjy33 Lv 1 1 pt. 7,442
  4. Avatar for ppeng 264. ppeng Lv 1 1 pt. 7,208
  5. Avatar for Yuki 265. Yuki Lv 1 1 pt. 5,204
  6. Avatar for betleif 266. betleif Lv 1 1 pt. 2,960
  7. Avatar for Goldschmidt 267. Goldschmidt Lv 1 1 pt. 2,952
  8. Avatar for WeiKA 268. WeiKA Lv 1 1 pt. 2,952
  9. Avatar for wbuser 269. wbuser Lv 1 1 pt. 2,952
  10. Avatar for vilge 270. vilge Lv 1 1 pt. 2,952

Comments

tjbertram Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h