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683: CASP10 Target T0709 Repost

Closed since about 13 years ago

Intermediate Overall Prediction

Summary

Created
March 02, 2013
Expires
Max points
100
Description

We are reposting this 33 residue CASP10 target to try out the new
Disulfide Count Score Filter. We are giving you the top-predicted
templates from 3 different alignment programs and you can see that
they are all very similar. More details about this CASP target are in
the puzzle comments.

Top groups

  1. Avatar for HMT heritage 11. HMT heritage 7 pts. 8,760
  2. Avatar for Deleted group 12. Deleted group pts. 8,758
  3. Avatar for Deleted group 13. Deleted group pts. 8,748
  4. Avatar for SETI.Germany 14. SETI.Germany 3 pts. 8,690
  5. Avatar for Richard Dawkins Foundation 15. Richard Dawkins Foundation 2 pts. 8,667
  6. Avatar for Natural Abilities 16. Natural Abilities 1 pt. 8,661
  7. Avatar for Team Schleswig-Holstein 17. Team Schleswig-Holstein 1 pt. 8,583
  8. Avatar for Davidson College Wildcats 18. Davidson College Wildcats 1 pt. 8,567
  9. Avatar for Piratenpartei Deutschland 19. Piratenpartei Deutschland 1 pt. 8,374
  10. Avatar for Brony@Home 20. Brony@Home 1 pt. 8,281
  1. Avatar for gramps 61. gramps Lv 1 30 pts. 8,690
  2. Avatar for MurloW 62. MurloW Lv 1 29 pts. 8,686
  3. Avatar for bendbob 63. bendbob Lv 1 28 pts. 8,685
  4. Avatar for Jim Fraser 64. Jim Fraser Lv 1 28 pts. 8,677
  5. Avatar for johnmitch 65. johnmitch Lv 1 27 pts. 8,674
  6. Avatar for nemo7731 66. nemo7731 Lv 1 26 pts. 8,672
  7. Avatar for Schleicher 67. Schleicher Lv 1 26 pts. 8,670
  8. Avatar for Aubade00 68. Aubade00 Lv 1 25 pts. 8,669
  9. Avatar for drumpeter18yrs9yrs 69. drumpeter18yrs9yrs Lv 1 25 pts. 8,668
  10. Avatar for rsosborne 70. rsosborne Lv 1 24 pts. 8,667

Comments

tjbertram Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h