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782: De-novo Freestyle 30: Hand-folding Round

Closed since over 12 years ago

Intermediate Overall Prediction Hand-Folding

Summary

Created
September 20, 2013
Expires
Max points
100
Description

We are giving you another currently unsolved protein as an extended chain. This round only GUI scripts are allowed and sharing has been disabled. After this puzzle expires, the puzzle will be re-posted and LUA scripts and sharing will be allowed. You'll be able to load in your solutions from this puzzle and use scripting and sharing.

Top groups

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    1. Contenders
    100 pts. 10,234
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  1. Avatar for YGK 141. YGK Lv 1 2 pts. 8,873
  2. Avatar for Altercomp 142. Altercomp Lv 1 2 pts. 8,873
  3. Avatar for FreeFolder 143. FreeFolder Lv 1 2 pts. 8,861
  4. Avatar for Chris857 144. Chris857 Lv 1 2 pts. 8,854
  5. Avatar for Trile Flotsam 145. Trile Flotsam Lv 1 2 pts. 8,853
  6. Avatar for wosser1 146. wosser1 Lv 1 2 pts. 8,834
  7. Avatar for Rated.Em 147. Rated.Em Lv 1 2 pts. 8,816
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  10. Avatar for Bruno Kestemont 150. Bruno Kestemont Lv 1 2 pts. 8,788

Comments

bkoep Staff Lv 1

We're still waiting on the secondary structure predictions for this protein. Check back later for updates!

bkoep Staff Lv 1

SPILPKAENVDSICIDFTNSIQKIYDDSESIQKILSEIATGKRTEKQSIQDYPSAEEYGTINIENNGGMTTMFYYEENGKYYIECPYKGIYEIENNFEDMI

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Isoleucines at residues 13 and 25 are highly predicted to be part of a sheet. However, the Isoleucines at residues 31 and 38 are predicted to be part of a helix!