Placeholder image of a protein
Icon representing a puzzle

906: HIV-1 Env gp41 CASP11 T0787: WeFold Round

Closed since almost 12 years ago

Intermediate Overall Prediction CASP11

Summary

Created
June 02, 2014
Expires
Max points
100
Description

This 153 residue CASP11 Target is part of the HIV-1 Env complex. We are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them.

Top groups

  1. Avatar for Anthropic Dreams
    1. Anthropic Dreams
    100 pts. 9,705
  2. Avatar for Beta Folders 2. Beta Folders 83 pts. 9,692
  3. Avatar for Contenders 3. Contenders 69 pts. 9,622
  4. Avatar for Go Science 4. Go Science 56 pts. 9,590
  5. Avatar for Void Crushers 5. Void Crushers 45 pts. 9,583
  6. Avatar for Gargleblasters 6. Gargleblasters 36 pts. 9,489
  7. Avatar for L'Alliance Francophone 7. L'Alliance Francophone 29 pts. 9,431
  8. Avatar for Russian team 8. Russian team 23 pts. 9,264
  9. Avatar for Deleted group 9. Deleted group pts. 9,044
  10. Avatar for Deleted group 10. Deleted group pts. 9,028
  1. Avatar for wisky
    1. wisky Lv 1
    100 pts. 9,695
  2. Avatar for retiredmichael 2. retiredmichael Lv 1 98 pts. 9,691
  3. Avatar for karstenw 3. karstenw Lv 1 96 pts. 9,641
  4. Avatar for Vredeman 4. Vredeman Lv 1 94 pts. 9,629
  5. Avatar for BitSpawn 5. BitSpawn Lv 1 92 pts. 9,598
  6. Avatar for spvincent 6. spvincent Lv 1 90 pts. 9,595
  7. Avatar for Madde 7. Madde Lv 1 88 pts. 9,583
  8. Avatar for pauldunn 8. pauldunn Lv 1 86 pts. 9,523
  9. Avatar for mirp 9. mirp Lv 1 84 pts. 9,501
  10. Avatar for LociOiling 10. LociOiling Lv 1 82 pts. 9,497

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the server model that has been provided in the puzzle.
______

If you are a new Foldit player, please make sure you have completed all these tutorials before trying this puzzle:

  • lonely sheets,
  • lock and lower,
  • rebuild,
  • structure and rebuild,
  • control over clashing.
    ______

More information about this CASP Target:
"CASP targets T0787 (gp41) and T0788 (gp120) are two parts of the HIV-1 Env complex, comprising three gp120 subunits and three gp41 subunits."
http://predictioncenter.org/casp11/target.cgi?id=36