Placeholder image of a protein
Icon representing a puzzle

906: HIV-1 Env gp41 CASP11 T0787: WeFold Round

Closed since almost 12 years ago

Intermediate Overall Prediction CASP11

Summary

Created
June 02, 2014
Expires
Max points
100
Description

This 153 residue CASP11 Target is part of the HIV-1 Env complex. We are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them.

Top groups

  1. Avatar for Italiani Al Lavoro 11. Italiani Al Lavoro 10 pts. 9,005
  2. Avatar for Repro-men 12. Repro-men 8 pts. 9,001
  3. Avatar for Mojo Risin' 13. Mojo Risin' 6 pts. 8,989
  4. Avatar for FoldIt@Netherlands 14. FoldIt@Netherlands 4 pts. 8,914
  5. Avatar for HMT heritage 15. HMT heritage 3 pts. 8,843
  6. Avatar for Richard Dawkins Foundation 16. Richard Dawkins Foundation 2 pts. 8,513
  7. Avatar for Natural Abilities 17. Natural Abilities 2 pts. 8,478
  8. Avatar for Geekdo 18. Geekdo 1 pt. 8,330
  9. Avatar for Piratenpartei Deutschland 19. Piratenpartei Deutschland 1 pt. 8,280
  10. Avatar for Team Schleswig-Holstein 20. Team Schleswig-Holstein 1 pt. 8,253
  1. Avatar for Snake bite 111. Snake bite Lv 1 4 pts. 8,636
  2. Avatar for Incongruous 112. Incongruous Lv 1 3 pts. 8,632
  3. Avatar for tyler0911 113. tyler0911 Lv 1 3 pts. 8,631
  4. Avatar for johngran 114. johngran Lv 1 3 pts. 8,624
  5. Avatar for Museka 115. Museka Lv 1 3 pts. 8,606
  6. Avatar for stomjoh 116. stomjoh Lv 1 3 pts. 8,598
  7. Avatar for andrewtmaxwell 117. andrewtmaxwell Lv 1 3 pts. 8,588
  8. Avatar for mitarcher 118. mitarcher Lv 1 3 pts. 8,583
  9. Avatar for Alistair69 119. Alistair69 Lv 1 3 pts. 8,582
  10. Avatar for Ch Garnier 120. Ch Garnier Lv 1 3 pts. 8,539

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the server model that has been provided in the puzzle.
______

If you are a new Foldit player, please make sure you have completed all these tutorials before trying this puzzle:

  • lonely sheets,
  • lock and lower,
  • rebuild,
  • structure and rebuild,
  • control over clashing.
    ______

More information about this CASP Target:
"CASP targets T0787 (gp41) and T0788 (gp120) are two parts of the HIV-1 Env complex, comprising three gp120 subunits and three gp41 subunits."
http://predictioncenter.org/casp11/target.cgi?id=36