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926: CASP11 T0818: WeFold Round

Closed since almost 12 years ago

Intermediate Intermediate Overall Overall Prediction Prediction CASP11 CASP11

Summary

Created: June 26, 2014
Expires: July 02, 2014 at 21:00 UTC
Max points: 100

Description

For this 143 residue CASP11 Target, T0818, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

11. Deleted group pts. 9,478
12. Italiani Al Lavoro 3 pts. 9,445
13. Repro-men 2 pts. 9,442
14. Natural Abilities 1 pt. 9,375
15. HMT heritage 1 pt. 9,339
16. Team Schleswig-Holstein 1 pt. 9,156
17. DSN @ Home 1 pt. 9,087
18. foldeRNA 1 pt. 9,067
19. Czech National Team 1 pt. 8,717
20. It's over 9000! 1 pt. 8,679

121. AsDawnBreaks Lv 1 2 pts. 8,993
122. guineapig Lv 1 2 pts. 8,986
123. parsnip Lv 1 2 pts. 8,983
124. Pro Lapser Lv 1 2 pts. 8,980
125. MuckeMcFly Lv 1 1 pt. 8,979
126. goastano Lv 1 1 pt. 8,963
127. Chrisbe2 Lv 1 1 pt. 8,956
128. NycteaSandiaca Lv 1 1 pt. 8,954
129. dbuske Lv 1 1 pt. 8,953
130. leehaggis Lv 1 1 pt. 8,938

Comments

beta_helix Staff Lv 1

June 26, 2014

NOTE: Numbering is off as the first 23 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=48924&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.