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926: CASP11 T0818: WeFold Round

Closed since almost 12 years ago

Intermediate Intermediate Overall Overall Prediction Prediction CASP11 CASP11

Summary

Created
June 26, 2014
Expires
Max points
100
Description

For this 143 residue CASP11 Target, T0818, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for Deleted group 11. Deleted group pts. 9,478
  2. Avatar for Italiani Al Lavoro 12. Italiani Al Lavoro 3 pts. 9,445
  3. Avatar for Repro-men 13. Repro-men 2 pts. 9,442
  4. Avatar for Natural Abilities 14. Natural Abilities 1 pt. 9,375
  5. Avatar for HMT heritage 15. HMT heritage 1 pt. 9,339
  6. Avatar for Team Schleswig-Holstein 16. Team Schleswig-Holstein 1 pt. 9,156
  7. Avatar for DSN @ Home 17. DSN @ Home 1 pt. 9,087
  8. Avatar for foldeRNA 18. foldeRNA 1 pt. 9,067
  9. Avatar for Czech National Team 19. Czech National Team 1 pt. 8,717
  10. Avatar for It's over 9000! 20. It's over 9000! 1 pt. 8,679
  1. Avatar for mrsthursday 191. mrsthursday Lv 1 1 pt. 0
  2. Avatar for Professor_Rotom 192. Professor_Rotom Lv 1 1 pt. 0
  3. Avatar for JoshNZ_3DP 193. JoshNZ_3DP Lv 1 1 pt. 0
  4. Avatar for gameupshark 194. gameupshark Lv 1 1 pt. 0
  5. Avatar for michpon 195. michpon Lv 1 1 pt. 0
  6. Avatar for campusland 196. campusland Lv 1 1 pt. 0
  7. Avatar for melkior 197. melkior Lv 1 1 pt. 0
  8. Avatar for puxatudo 198. puxatudo Lv 1 1 pt. 0
  9. Avatar for frood66 199. frood66 Lv 1 1 pt. 0
  10. Avatar for histon 200. histon Lv 1 1 pt. 0

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 23 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=48924&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.