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949: CASP11 Target Ts818: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 26, 2014
Expires
Max points
100
Description

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2250 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for foldeRNA 21. foldeRNA 1 pt. 7,113
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 6,164
  3. Avatar for Deleted group 23. Deleted group pts. 957
  1. Avatar for CheezWhiz 31. CheezWhiz Lv 1 45 pts. 10,576
  2. Avatar for Deleted player 32. Deleted player pts. 10,530
  3. Avatar for Hiro Protagonist 33. Hiro Protagonist Lv 1 42 pts. 10,527
  4. Avatar for Bruno Kestemont 34. Bruno Kestemont Lv 1 41 pts. 10,526
  5. Avatar for Museka 35. Museka Lv 1 40 pts. 10,494
  6. Avatar for uhuuhu 36. uhuuhu Lv 1 39 pts. 10,482
  7. Avatar for Tony Origami 37. Tony Origami Lv 1 37 pts. 10,446
  8. Avatar for deLaCeiba 38. deLaCeiba Lv 1 36 pts. 10,401
  9. Avatar for Mike Cassidy 39. Mike Cassidy Lv 1 35 pts. 10,379
  10. Avatar for smholst 40. smholst Lv 1 34 pts. 10,379

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.