Placeholder image of a protein
Icon representing a puzzle

949: CASP11 Target Ts818: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 26, 2014
Expires
Max points
100
Description

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2250 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for Anthropic Dreams
    1. Anthropic Dreams
    100 pts. 11,494
  2. Avatar for Go Science 2. Go Science 80 pts. 11,350
  3. Avatar for L'Alliance Francophone 3. L'Alliance Francophone 63 pts. 11,253
  4. Avatar for Void Crushers 4. Void Crushers 49 pts. 11,191
  5. Avatar for Beta Folders 5. Beta Folders 37 pts. 11,082
  6. Avatar for Gargleblasters 6. Gargleblasters 28 pts. 11,080
  7. Avatar for Contenders 7. Contenders 21 pts. 11,015
  8. Avatar for Deleted group 8. Deleted group pts. 10,974
  9. Avatar for SETI.Germany 9. SETI.Germany 11 pts. 10,757
  10. Avatar for Deleted group 10. Deleted group pts. 10,576
  1. Avatar for rinze 121. rinze Lv 1 1 pt. 8,431
  2. Avatar for Znaika 122. Znaika Lv 1 1 pt. 8,369
  3. Avatar for turbolag 123. turbolag Lv 1 1 pt. 8,343
  4. Avatar for SaraL 124. SaraL Lv 1 1 pt. 8,335
  5. Avatar for SouperGenious 125. SouperGenious Lv 1 1 pt. 8,278
  6. Avatar for persephone977 126. persephone977 Lv 1 1 pt. 8,183
  7. Avatar for arginia 127. arginia Lv 1 1 pt. 8,174
  8. Avatar for Tac1 128. Tac1 Lv 1 1 pt. 8,172
  9. Avatar for Paulo Roque 129. Paulo Roque Lv 1 1 pt. 8,102
  10. Avatar for frostschutz 130. frostschutz Lv 1 1 pt. 8,064

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.