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951: CASP11 Target Ts824: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 28, 2014
Expires
Max points
100
Description

NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 21. HMT heritage 1 pt. 0
  1. Avatar for Jim Fraser 91. Jim Fraser Lv 1 2 pts. 8,809
  2. Avatar for goastano 92. goastano Lv 1 2 pts. 8,788
  3. Avatar for Crossed Sticks 93. Crossed Sticks Lv 1 2 pts. 8,776
  4. Avatar for Lophty 94. Lophty Lv 1 2 pts. 8,766
  5. Avatar for Tac1 95. Tac1 Lv 1 2 pts. 8,614
  6. Avatar for reefyrob 96. reefyrob Lv 1 2 pts. 8,525
  7. Avatar for NeedMoreCoffee 97. NeedMoreCoffee Lv 1 2 pts. 8,501
  8. Avatar for nmos1056 98. nmos1056 Lv 1 2 pts. 8,465
  9. Avatar for frezae 99. frezae Lv 1 2 pts. 8,446
  10. Avatar for dbuske 100. dbuske Lv 1 1 pt. 8,440

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brgreening Lv 1

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.