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951: CASP11 Target Ts824: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 28, 2014
Expires
Max points
100
Description

NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 21. HMT heritage 1 pt. 0
  1. Avatar for dettingen 101. dettingen Lv 1 1 pt. 8,381
  2. Avatar for fishercat 102. fishercat Lv 1 1 pt. 8,367
  3. Avatar for Paulo Roque 103. Paulo Roque Lv 1 1 pt. 8,339
  4. Avatar for lange 104. lange Lv 1 1 pt. 8,307
  5. Avatar for WBarme1234 105. WBarme1234 Lv 1 1 pt. 8,288
  6. Avatar for NycteaSandiaca 106. NycteaSandiaca Lv 1 1 pt. 8,253
  7. Avatar for Arne Heessels 107. Arne Heessels Lv 1 1 pt. 8,235
  8. Avatar for smileyfuntime 108. smileyfuntime Lv 1 1 pt. 8,211
  9. Avatar for Close At Hand 109. Close At Hand Lv 1 1 pt. 8,179
  10. Avatar for brgreening 110. brgreening Lv 1 1 pt. 8,175

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brgreening Lv 1

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.