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951: CASP11 Target Ts824: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 28, 2014
Expires
Max points
100
Description

NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 21. HMT heritage 1 pt. 0
  1. Avatar for Mike Cassidy 111. Mike Cassidy Lv 1 1 pt. 8,167
  2. Avatar for persephone977 112. persephone977 Lv 1 1 pt. 8,149
  3. Avatar for FreeFolder 113. FreeFolder Lv 1 1 pt. 8,069
  4. Avatar for martinf 114. martinf Lv 1 1 pt. 8,062
  5. Avatar for GreekCivilization 115. GreekCivilization Lv 1 1 pt. 8,023
  6. Avatar for MaartenDesnouck 116. MaartenDesnouck Lv 1 1 pt. 8,012
  7. Avatar for mjenuwine 117. mjenuwine Lv 1 1 pt. 8,010
  8. Avatar for davsmi9 118. davsmi9 Lv 1 1 pt. 8,002
  9. Avatar for Dantoto 119. Dantoto Lv 1 1 pt. 7,973
  10. Avatar for karost 120. karost Lv 1 1 pt. 7,967

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brgreening Lv 1

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.