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951: CASP11 Target Ts824: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 28, 2014
Expires
Max points
100
Description

NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 21. HMT heritage 1 pt. 0
  1. Avatar for Pibeagles 131. Pibeagles Lv 1 1 pt. 7,175
  2. Avatar for deLaCeiba 132. deLaCeiba Lv 1 1 pt. 7,117
  3. Avatar for TheMowzoon 133. TheMowzoon Lv 1 1 pt. 6,671
  4. Avatar for azvolpe 134. azvolpe Lv 1 1 pt. 6,495
  5. Avatar for Jaco van As 135. Jaco van As Lv 1 1 pt. 6,428
  6. Avatar for aspadistra 136. aspadistra Lv 1 1 pt. 6,426
  7. Avatar for GenVeers 137. GenVeers Lv 1 1 pt. 6,305
  8. Avatar for leprechaun 138. leprechaun Lv 1 1 pt. 6,187
  9. Avatar for Thooliv 139. Thooliv Lv 1 1 pt. 6,090
  10. Avatar for perrya 140. perrya Lv 1 1 pt. 5,953

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brgreening Lv 1

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.