Placeholder image of a protein
Icon representing a puzzle

951: CASP11 Target Ts824: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 28, 2014
Expires
Max points
100
Description

NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 21. HMT heritage 1 pt. 0
  1. Avatar for slo 151. slo Lv 1 1 pt. 604
  2. Avatar for drising 152. drising Lv 1 1 pt. 0
  3. Avatar for cassandraberry81897 153. cassandraberry81897 Lv 1 1 pt. 0
  4. Avatar for froggs554 154. froggs554 Lv 1 1 pt. 0
  5. Avatar for viosca 155. viosca Lv 1 1 pt. 0
  6. Avatar for Kevonni 156. Kevonni Lv 1 1 pt. 0
  7. Avatar for gcm24 157. gcm24 Lv 1 1 pt. 0
  8. Avatar for MurloW 158. MurloW Lv 1 1 pt. 0
  9. Avatar for Lucas Roque 159. Lucas Roque Lv 1 1 pt. 0
  10. Avatar for packer 160. packer Lv 1 1 pt. 0

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brgreening Lv 1

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.