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951: CASP11 Target Ts824: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 28, 2014
Expires
Max points
100
Description

NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 21. HMT heritage 1 pt. 0
  1. Avatar for StackOverflow 51. StackOverflow Lv 1 17 pts. 9,718
  2. Avatar for SamuelJackson 52. SamuelJackson Lv 1 16 pts. 9,700
  3. Avatar for stomjoh 53. stomjoh Lv 1 15 pts. 9,648
  4. Avatar for GaryForbis 54. GaryForbis Lv 1 15 pts. 9,594
  5. Avatar for Bletchley Park 55. Bletchley Park Lv 1 14 pts. 9,568
  6. Avatar for joremen 56. joremen Lv 1 13 pts. 9,564
  7. Avatar for g_b 57. g_b Lv 1 13 pts. 9,544
  8. Avatar for cobaltteal 58. cobaltteal Lv 1 12 pts. 9,520
  9. Avatar for caglar 59. caglar Lv 1 12 pts. 9,500
  10. Avatar for Antibrad 60. Antibrad Lv 1 11 pts. 9,499

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brgreening Lv 1

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.