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951: CASP11 Target Ts824: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Intermediate Overall Overall Prediction Prediction CASP11 CASP11 Predicted Contacts Predicted Contacts

Summary

Created
July 28, 2014
Expires
Max points
100
Description

NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 21. HMT heritage 1 pt. 0
  1. Avatar for Deleted player 61. Deleted player 11 pts. 9,494
  2. Avatar for marie.p 62. marie.p Lv 1 10 pts. 9,490
  3. Avatar for guineapig 63. guineapig Lv 1 10 pts. 9,438
  4. Avatar for jobo0502 64. jobo0502 Lv 1 9 pts. 9,421
  5. Avatar for smholst 65. smholst Lv 1 9 pts. 9,421
  6. Avatar for pgiles 66. pgiles Lv 1 9 pts. 9,403
  7. Avatar for phallicies 67. phallicies Lv 1 8 pts. 9,402
  8. Avatar for bertro 68. bertro Lv 1 8 pts. 9,387
  9. Avatar for jamiexq 69. jamiexq Lv 1 7 pts. 9,384
  10. Avatar for silverberg 70. silverberg Lv 1 7 pts. 9,379

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brgreening Lv 1

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.