Placeholder image of a protein
Icon representing a puzzle

951: CASP11 Target Ts824: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Intermediate Overall Overall Prediction Prediction CASP11 CASP11 Predicted Contacts Predicted Contacts

Summary

Created
July 28, 2014
Expires
Max points
100
Description

NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 21. HMT heritage 1 pt. 0
  1. Avatar for Lindata 71. Lindata Lv 1 7 pts. 9,372
  2. Avatar for versat82 72. versat82 Lv 1 6 pts. 9,330
  3. Avatar for allie_heather47 73. allie_heather47 Lv 1 6 pts. 9,322
  4. Avatar for Anfinsen_slept_here 74. Anfinsen_slept_here Lv 1 6 pts. 9,306
  5. Avatar for SKSbell 75. SKSbell Lv 1 5 pts. 9,276
  6. Avatar for phi16 76. phi16 Lv 1 5 pts. 9,270
  7. Avatar for adam2184 77. adam2184 Lv 1 5 pts. 9,247
  8. Avatar for Arthur Dent 78. Arthur Dent Lv 1 5 pts. 9,238
  9. Avatar for ViJay7019 79. ViJay7019 Lv 1 4 pts. 9,227
  10. Avatar for Deleted player 80. Deleted player pts. 9,122

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brgreening Lv 1

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.