Timo van der Laan Lv 1
NOT A SCRIPT
Contains a template for a Makefile and a definitions file.
Thanks rav3, I used that as a basis for this.
You need the gcc compiler or any other C-preprosessor to do most of the conversion work.
Profile
- Name
- Unix V1 to V2 toolset
- ID
- 43867
- Shared with
- Public
- Parent
- None
- Children
- None
- Created on
- August 12, 2012 at 09:40 AM UTC
- Updated on
- August 12, 2012 at 09:40 AM UTC
- Description
NOT a script. For scriptwriters on a unix like environment (or using cygwin in Windows)
Best for
Code
---This is NOT a recipe
-- My way of converting scripts from V1 to V2
-- You need a unix like environment (on Windows I use cygwin)
First a Makefile
--------------------------
TARGETS=prog.V2
all: ${TARGETS}
new:
rm ${TARGETS}
make all
${TARGETS}: %.V2: %.V1
cat libV2.def $< > tmp.c
gcc -E tmp.c |sed -e "/^#.*/d" | cat -s >$@
rm tmp.c
---------------end of Makefile
Please note the tabs are necessary.
And the conversion file. Allmost everything can be autoconverted only some band calls need handwork.
After conversion clearly marked with TODO.
-----file libV2.def
#define are_conditions_met current.AreConditionsMet
#define band_add_segment_segment(sgi1, sgi2) band.AddBetweenSegments(sgi1, sgi2)
#define band_delete TODO if a~= nil then band.Delete(a) else band.DeleteAll() endBAND_DELETE
#define band_disable TODO if a~=nil then band.Disable(a) else band.DisableAll() endBAND_DISABLE
#define band_enable TODO if a~=nil then band.Enable(a) else band.EnableAll() endBAND_ENABLE
#define band_set_length(a,b) band.SetGoalLength(a,b)
#define band_set_strength(a,b) band.SetStrength(a,b)
#define get_band_count band.GetCount
#define deselect_all selection.DeselectAll
#define deselect_index(sgn) selection.Deselect(sgn)
#define select_all selection.SelectAll
#define select_index(sgn) selection.Select(sgn)
#define select_index_range(sg1,sg2) selection.SelectRange(sg1,sg2)
#define do_freeze(bbone,schain) freeze.FreezeSelected(bbone,schain)
#define do_unfreeze_all freeze.UnfreezeAll
#define do_global_wiggle_all(iters) structure.WiggleAll(iters,true,true)
#define do_global_wiggle_backbone(iters) structure.WiggleAll(iters, true,false)
#define do_global_wiggle_sidechains(iters) structure.WiggleAll(iters,false,true)
#define do_local_rebuild(iters) structure.RebuildSelected(iters)
#define do_local_wiggle(iters) structure.LocalWiggleSelected(iters,true,true)
#define do_mutate(iters) structure.MutateSidechainsSelected(iters)
#define do_shake(iters) structure.ShakeSidechainsSelected(iters)
#define do_sidechain_snap(sgn, snap) rotamer.SetRotamer(sgn, snap)
#define get_sidechain_snap_count(sgn) rotamer.GetCount(sgn)
#define load_structure save.LoadSecondaryStructure
#define save_structure save.SaveSecondaryStructure
#define quickload(slot) save.Quickload(slot)
#define quicksave(slot) save.Quicksave(slot)
#define get_exploration_score current.GetExplorationMultiplier
#define get_ranked_score current.GetScore
#define get_score current.GetEnergyScore
#define get_segment_distance(sg1,sg2) structure.GetDistance(sg1,sg2)
#define get_aa(sn) structure.GetAminoAcid(sn)
#define get_segment_count structure.GetCount
#define get_ss(sn) structure.GetSecondaryStructure(sn)
#define is_hydrophobic(sn) structure.IsHydrophobic(sn)
#define replace_aa(aa) for i=1,structure.GetCount() do \n if selection.IsSelected(i) then \n structure.SetAminoAcid(i, aa) \n end \n end
#define replace_ss(ss) for i=1,structure.GetCount() do \n if selection.IsSelected(i) then \n structure.SetSecondaryStructure(i,ss) \n end \n end
#define get_segment_score(sg) current.GetSegmentEnergyScore(sg)
#define get_segment_score_part(score_part,sg) current.GetSegmentEnergySubscore(sg,score_part)
#define reset_puzzle puzzle.StartOver
#define restore_abs_best absolutebest.Restore
#define restore_credit_best creditbest.Restore
#define reset_recent_best recentbest.Save
#define restore_recent_best recentbest.Restore
#define set_behavior_clash_importance(ci) behavior.SetClashImportance(ci)
---end of file libV2.def
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