Recipe: 649r2 comment structs

created by gramps

Profile

• Name: 649r2 comment structs
• ID: 44544
• Shared with: Public
• Parent: 647 comment structs
• Children: None
• Created on: November 10, 2012 at 13:17 PM UTC
• Updated on: November 10, 2012 at 13:17 PM UTC
• Description:

  Yields predicted structs from the comment on puzzle 647 page offset 24 segs

Code

newprog = "649r2 comment structs"
--
-- autogenerated code

local Struct_Types = {
["L"] = "Loop",
["E"] = "Sheet",
["H"] = "Helix",
["M"] = "Ligand" }

function Make_All_Loop()
  selection.SelectAll()
  structure.SetSecondaryStructureSelected("L")
  print("everything has been changed to a loop")
  selection.DeselectAll()
end -- function Make_All_Loop

function Restore_One_Stuct(s_start,s_end,s_type)
selection.SelectRange(s_start,s_end)
print(Struct_Types[s_type].."("..s_start..","..s_end..")")
structure.SetSecondaryStructureSelected(s_type)
selection.DeselectAll()
end -- function Restore_One_Stuct

function Restore_Structs()
  Restore_One_Stuct(1,24,"H")
  Restore_One_Stuct(25,36,"L")
  Restore_One_Stuct(37,42,"E")
  Restore_One_Stuct(43,51,"L")
  Restore_One_Stuct(52,53,"E")
  Restore_One_Stuct(54,58,"L")
  Restore_One_Stuct(59,62,"E")
  Restore_One_Stuct(63,66,"L")
  Restore_One_Stuct(67,74,"E")
  Restore_One_Stuct(75,78,"L")
  Restore_One_Stuct(79,84,"E")
  Restore_One_Stuct(85,85,"L")
  Restore_One_Stuct(86,89,"E")
  Restore_One_Stuct(90,94,"L")
  Restore_One_Stuct(95,101,"H")
  Restore_One_Stuct(102,113,"L")
  Restore_One_Stuct(114,120,"E")
  Restore_One_Stuct(121,123,"L")
  Restore_One_Stuct(124,131,"E")
  Restore_One_Stuct(132,139,"L")
  Restore_One_Stuct(140,147,"E")
  Restore_One_Stuct(148,158,"L")
  Restore_One_Stuct(159,161,"H")
  Restore_One_Stuct(162,163,"L")
end -- function Restore_Structs

print("begin ",newprog)

if structure.GetCount() == 	163	 then -- num segs match
  Make_All_Loop()
  Restore_Structs()
else -- print warning line
  print("segment number mismatch -- no action taken")
end

print("end ",newprog)

Comments

[gramps]

begin 649r2 comment structs
everything has been changed to a loop
Helix(1,24) – helix is a guess; segs 1 to 24 didn't appear in puzzle 647
Loop(25,36)
Sheet(37,42)
Loop(43,51)
Sheet(52,53)
Loop(54,58)
Sheet(59,62)
Loop(63,66)
Sheet(67,74)
Loop(75,78)
Sheet(79,84)
Loop(85,85)
Sheet(86,89)
Loop(90,94)
Helix(95,101)
Loop(102,113)
Sheet(114,120)
Loop(121,123)
Sheet(124,131)
Loop(132,139)
Sheet(140,147)
Loop(148,158)
Helix(159,161)
Loop(162,163)
end 649r2 comment structs

This recipe applies to …
649: Electron Density for CASP10 Target T0691 Round 2
https://fold.it/portal/node/993861

… which is an update to …
647: Electron Density for CASP10 Target T0691
https://fold.it/portal/node/993806

except that segs 1-24 in the newer puzzle (they seem to form a helix) did not appear in puzzle 647. This recipe was created by taking the code from 647's predicted structs recipe and adding 24 to all the numbers; so the source for this is …
Recipe: 647 comment structs
https://fold.it/portal/recipe/44441

Thanks to AD team members for assistance figuring out these details.