Recipe: 657 jpred structs

created by gramps

Profile

• Name: 657 jpred structs
• ID: 44783
• Shared with: Public
• Parent: None
• Children: None
• Created on: November 28, 2012 at 02:38 AM UTC
• Updated on: November 28, 2012 at 02:38 AM UTC
• Description:

  yields the structures predicted in the jpred screen linked on the puzzle 657 home page

Code

newprog = "657 jpred structs"
--
-- autogenerated code

local Struct_Types = {
["L"] = "Loop",
["E"] = "Sheet",
["H"] = "Helix",
["M"] = "Ligand" }

function Make_All_Loop()
  selection.SelectAll()
  structure.SetSecondaryStructureSelected("L")
  print("everything has been changed to a loop")
  selection.DeselectAll()
end -- function Make_All_Loop

function Restore_One_Stuct(s_start,s_end,s_type)
selection.SelectRange(s_start,s_end)
print(Struct_Types[s_type].."("..s_start..","..s_end..")")
structure.SetSecondaryStructureSelected(s_type)
selection.DeselectAll()
end -- function Restore_One_Stuct

function Restore_Structs()
  Restore_One_Stuct(1,1,"L")
  Restore_One_Stuct(2,6,"H")
  Restore_One_Stuct(7,12,"L")
  Restore_One_Stuct(13,28,"H")
  Restore_One_Stuct(29,32,"L")
  Restore_One_Stuct(33,46,"H")
  Restore_One_Stuct(47,48,"L")
  Restore_One_Stuct(49,58,"H")
  Restore_One_Stuct(59,65,"L")
  Restore_One_Stuct(66,77,"E")
  Restore_One_Stuct(78,81,"L")
  Restore_One_Stuct(82,92,"E")
  Restore_One_Stuct(93,96,"L")
  Restore_One_Stuct(97,103,"E")
  Restore_One_Stuct(104,107,"L")
  Restore_One_Stuct(108,112,"E")
  Restore_One_Stuct(113,114,"L")
end -- function Restore_Structs

print("begin ",newprog)

if structure.GetCount() == 	114	 then -- num segs match
  Make_All_Loop()
  Restore_Structs()
else -- print warning line
  print("segment number mismatch -- no action taken")
end

print("end ",newprog)

Comments

[gramps]

begin 657 jpred structs
everything has been changed to a loop
Loop(1,1)
Helix(2,6)
Loop(7,12)
Helix(13,28)
Loop(29,32)
Helix(33,46)
Loop(47,48)
Helix(49,58)
Loop(59,65)
Sheet(66,77)
Loop(78,81)
Sheet(82,92)
Loop(93,96)
Sheet(97,103)
Loop(104,107)
Sheet(108,112)
Loop(113,114)
end 657 jpred structs

Puzzle 657 home page:
https://fold.it/portal/node/993977