Recipe: Jpred helper V1.0

created by gramps

Profile

• Name: Jpred helper V1.0
• ID: 44826
• Shared with: Public
• Parent: None
• Children: None
• Created on: December 03, 2012 at 16:20 PM UTC
• Updated on: December 03, 2012 at 16:20 PM UTC
• Description:

  prints out the model's AAs as a string in the output and also in a text box (use Cntl-C in text box to grab)

Code

-- Jpred helper V1.0
--
-- prints out the model's AAs as a string in the output
-- and also in a text box (use Cntl-C in text box to retrieve)
-- 
-- the string of AAs can be put into the Jpred secondary structure
 -- prediction server here:
-- http://www.compbio.dundee.ac.uk/www-jpred/
-- 
-- by gramps (John McLeod)
-- V1.0 -- December 3, 2012
--
progname = "Jpred helper V1.0"
--
jpred_url = "http://www.compbio.dundee.ac.uk/www-jpred/"
--
--
-- MAIN stuff
--
print(progname,"started")
--
local AA_string = ""
for i = 1, structure.GetCount() do
  AA_string = AA_string .. structure.GetAminoAcid(i)
end
--
local ask = dialog.CreateDialog("Jpred helper")
ask.Instructions = dialog.AddLabel("grab this string of models AAs to put into Jpred")
ask.OK = dialog.AddButton("OK", 1)
ask.Cancel = dialog.AddButton("Cancel", 0)
ask.AAString = dialog.AddTextbox("Cntl-C grabs AAs", AA_string)
if (dialog.Show(ask) > 0) then
  print("string of AAs for input to Jpred")
  print(AA_string)
  print("URL for Jpred")
  print(jpred_url)
else
  print("user canceled operation")
end
--
print(progname,"ended")
--
-- end Jpred helper V1.0

Comments

[gramps]

– Jpred helper V1.0

– prints out the model's AAs as a string in the output
– and also in a text box (use Cntl-C in text box to retrieve)
–
– the string of AAs can be put into the Jpred secondary structure
– prediction server here:
– http://www.compbio.dundee.ac.uk/www-jpred/
–
– by gramps (John McLeod)
– V1.0 – December 3, 2012
–
progname = "Jpred helper V1.0"
–
jpred_url = "http://www.compbio.dundee.ac.uk/www-jpred/"
–
–
– MAIN stuff
–
print(progname,"started")
–
local AA_string = ""
for i = 1, structure.GetCount() do
AA_string = AA_string .. structure.GetAminoAcid(i)
end
–
local ask = dialog.CreateDialog("Jpred helper")
ask.Instructions = dialog.AddLabel("grab this string of models AAs to put into Jpred")
ask.OK = dialog.AddButton("OK", 1)
ask.Cancel = dialog.AddButton("Cancel", 0)
ask.AAString = dialog.AddTextbox("Cntl-C grabs AAs", AA_string)
if (dialog.Show(ask) > 0) then
print("string of AAs for input to Jpred")
print(AA_string)
print("URL for Jpred")
print(jpred_url)
else
print("user canceled operation")
end
–
print(progname,"ended")
–
– end Jpred helper V1.0