Recipe: 678 jpred structs

created by gramps

Profile

• Name: 678 jpred structs
• ID: 45392
• Shared with: Public
• Parent: 674 jpred structs
• Children: None
• Created on: February 18, 2013 at 16:58 PM UTC
• Updated on: February 18, 2013 at 16:58 PM UTC
• Description:

  678 is 674 with first 11 segs removed manually subtracted 11 from all numbers in 674 jpred structs to get this

Code

newprog = "678 jpred structs"
--
-- autogenerated code

local Struct_Types = {
["L"] = "Loop",
["E"] = "Sheet",
["H"] = "Helix",
["M"] = "Ligand" }

function Make_All_Loop()
  selection.SelectAll()
  structure.SetSecondaryStructureSelected("L")
  print("everything has been changed to a loop")
  selection.DeselectAll()
end -- function Make_All_Loop

function Restore_One_Stuct(s_start,s_end,s_type)
selection.SelectRange(s_start,s_end)
print(Struct_Types[s_type].."("..s_start..","..s_end..")")
structure.SetSecondaryStructureSelected(s_type)
selection.DeselectAll()
end -- function Restore_One_Stuct

function Restore_Structs()
--  Restore_One_Stuct(1,11,"L")
  Restore_One_Stuct(1,7,"E")
  Restore_One_Stuct(8,16,"L")
  Restore_One_Stuct(17,18,"E")
  Restore_One_Stuct(19,28,"H")
  Restore_One_Stuct(29,33,"L")
  Restore_One_Stuct(34,42,"H")
  Restore_One_Stuct(43,58,"L")
  Restore_One_Stuct(59,59,"E")
  Restore_One_Stuct(60,73,"L")
  Restore_One_Stuct(74,77,"E")
  Restore_One_Stuct(78,81,"L")
  Restore_One_Stuct(82,84,"E")
  Restore_One_Stuct(85,89,"L")
  Restore_One_Stuct(90,97,"E")
  Restore_One_Stuct(98,102,"L")
  Restore_One_Stuct(103,113,"E")
  Restore_One_Stuct(114,119,"L")
  Restore_One_Stuct(120,124,"E")
  Restore_One_Stuct(125,130,"L")
  Restore_One_Stuct(131,136,"E")
  Restore_One_Stuct(137,137,"L")
  Restore_One_Stuct(138,145,"H")
  Restore_One_Stuct(146,147,"L")
end -- function Restore_Structs

print("begin ",newprog)

if structure.GetCount() == 	147	 then -- num segs match
  Make_All_Loop()
  Restore_Structs()
else -- print warning line
  print("segment number mismatch -- no action taken")
end

print("end ",newprog)

Comments

[gramps]

begin 678 jpred structs
everything has been changed to a loop
Sheet(1,7)
Loop(8,16)
Sheet(17,18)
Helix(19,28)
Loop(29,33)
Helix(34,42)
Loop(43,58)
Sheet(59,59)
Loop(60,73)
Sheet(74,77)
Loop(78,81)
Sheet(82,84)
Loop(85,89)
Sheet(90,97)
Loop(98,102)
Sheet(103,113)
Loop(114,119)
Sheet(120,124)
Loop(125,130)
Sheet(131,136)
Loop(137,137)
Helix(138,145)
Loop(146,147)
end 678 jpred structs

derived from recipe 674 jpred structs (all recipe output numbers here should be 11 less than in that recipe, hopefully handraulics worked OK ;-)
http://fold.it/portal/recipe/45367