Recipe: CG303 Structure Changes V3.100

created by Crashguard303

Profile

• Name: CG303 Structure Changes V3.100
• ID: 46032
• Shared with: Public
• Parent: None
• Children: None
• Created on: May 02, 2013 at 23:42 PM UTC
• Updated on: May 02, 2013 at 23:42 PM UTC
• Description:

  part of my "cardinal segment detection" used in GA+EO Remix ; finds changes in secondary structures and ; creates a segment list, where changes do occur.

  can also: ; -- freeze complete puzzle, ; then unfreeze detected segments to use them as "ankles" or ; -- band detected segments to use them as scaffolding nodes

  you can use this script: ; -- just for detection, or ; -> to protect the puzzle from breaking apart ; while wiggling and turning the CI to low values ;)

Code

--[[
Structure Changes V3.100 by Crashguard303

part of my "cardinal segment detection" used in GA+EO Remix
finds changes in secondary structures and
creates a segment list, where changes do occur.

can also:
-- freeze complete puzzle,
   then unfreeze detected segments to use them as "ankles" or
-- band detected segments to use them as scaffolding nodes

you can use this script:
-- just for detection, or
-> to protect the puzzle from breaking apart
   while wiggling and turning the CI to low values ;)
]]--

function structure_changes_append(structure_changes,seg_count)
-- scan secondary structures of all puzzle segments (1 to seg_count)
-- append segment indices with ss changes to table structure_changes
 local structure_changes= structure_changes

 local seg_count2= seg_count-1

 local i=1
 -- initialize segment iterator
 -- (position 1 -> first segment of puzzle)
 while i<seg_count2 do
 -- with iterator i,
 -- cycle through all puzzle segments (but not last)
       local ss1=structure.GetSecondaryStructure(i)
       -- check ss of segment with index i
       local ss2=structure.GetSecondaryStructure(i+1)
       -- check ss of segment behind index i
       if ss1~=ss2
       -- are ss different?
       -- primary, we want to find segments with loop-ss at the end of helix or sheet sections
       -- but sometimes helices are directly near (adjacent to) sheets
          then if     ss1=="L"
                      -- loop found at i? (-> other ss: behind i)
                      then table.insert(structure_changes,i)
               elseif ss2=="L"
                      -- loop found directly after i? (-> other ss: at i)
                      then table.insert(structure_changes,(i+1))
                           i=i+1
               elseif ss1=="H"
                      -- helix found at i? (-> other ss (but no loop): behind i)
                      then table.insert(structure_changes,i)
               elseif ss2=="H"
                      -- helix found directly after i? (-> other ss (but no loop): at i)
                      then table.insert(structure_changes,(i+1))
                           i=i+1
               end -- if ss1,ss2
       end -- if ss1~=ss2
       i=i+1
       -- increase iterator
       -- (next position -> next segment)
 end -- while i<seg_count2

 return structure_changes
end -- structure_changes_append()

function structure_changes_filter(structure_changes)
-- remove duplicate entries from table structure_changes
 local structure_changes= structure_changes

 local i=1
 -- initialize element iterator
 -- (position 1 -> first element of list)
 while i<=(#structure_changes-1) do
 -- with iterator i,
 -- cycle through all (but not last) elements in list
       if structure_changes[i]==structure_changes[i+1]
       -- element at current position identical with direct next one?
          then table.remove(structure_changes,(i+1))
               -- remove next one
               i=i-1
               -- as element was removed,
               -- we need to shift iterator
       end -- if structure_changes[i]==structure_changes[i+1]
       i=i+1
       -- increase iterator
       -- (next position -> next element)
 end

 return structure_changes
end -- structure_changes_filter()

function structure_changes_find(option)
-- detect structure changes
-- option.first=true: generally add first segment
-- option.last= true: generally add last  segment
 print("Detecting changes...")

 local seg_count=structure.GetCount()
 -- get number of segments

 local structure_changes={}
 -- initialize found list table

 if option.first -- activated?
     then table.insert(structure_changes,1)
          -- add first segment to list
 end -- if option.first

 structure_changes= structure_changes_append(structure_changes,seg_count)
 -- get segment numbers, where structure changes do occur

 if option.last -- activated?
    then table.insert(structure_changes,seg_count)
         -- add last segment to list
 end -- if option.last

 structure_changes= structure_changes_filter(structure_changes)
 -- remove duplicate entries

 return structure_changes
end -- structure_changes_find()

function structure_changes_show(structure_changes,option)
-- show detected structure changes
-- if set, do some freezing or banding

-- option.freeze= true:        freeze complete puzzle and unfreeze detected segments
-- option.sbands= true:        band detected segments with each other (scaffolding)

-- option.freeze_invert= true: invert freezing

-- option.sbands_mode= "grid": scaffold all detected segments with each other
-- option.sbands_mode= "ring": scaffold all detected segments with next only 

-- option.sbands_pitch =0:     use scaffolding - fix    seg's distances, how they are
-- option.sbands_pitch >0:     use scaffolding - change seg's distances (expand   puzzle)
-- option.sbands_pitch <0:     use scaffolding - change seg's distances (compress puzzle)

-- option.sbands_strength:     strength of scaffolding
 print("\nFound changes:")

 if option.freeze -- activated?
    then if option.freeze_invert -- activated?
            then freeze.UnfreezeAll()
                 -- unfreeze all segments
            else freeze.FreezeAll()
                 -- freeze all segments
         end -- if option.freeze_invert
 end -- if option.freeze
 
 local i
 -- initialize element iterator
 for i=1,#structure_changes do
 -- by variable i, cycle through all elements in list
 -- giving segments which have been found

     print('#'..i..': idx'..structure_changes[i])
     -- show segment number

     if option.freeze -- activated?
        then if option.freeze_invert -- activated?
                then freeze.Freeze(structure_changes[i],true,true)
                     -- freeze segment number
                else freeze.Unfreeze(structure_changes[i],true,true)
                     -- unfreeze segment number
             end -- if option.freeze_invert
     end -- if option.freeze
 end -- for i

 if option.sbands -- activated?
    then print("\nAdding bands:")
    if   option.sbands_mode=="ring"
         then sbands_apply_ring(structure_changes,option.sbands_pitch,option.sbands_strength)
    else -- if option.sbands_mode~="ring" -> =="grid"
              sbands_apply_grid(structure_changes,option.sbands_pitch,option.sbands_strength)
    end -- if option.sbands_mode
 end -- if option.bands
end -- structure_changes_show()

function sbands_apply_ring(structure_changes,sbands_pitch,sbands_strength)
-- using list structure_changes
 local i
 for i=1,#structure_changes do
 -- by variable i (origin segment),
 -- cycle through all elements in list structure_changes
 -- giving segments which have been found
     local j= i+1
     -- target segment: next element to i in list
     if j>#structure_changes
     -- element index out of list range?
        then j= 1
        -- take first element
     end -- if j
     band.AddBetweenSegments2(structure_changes[i],structure_changes[j],sbands_pitch,sbands_strength)
     -- band segment stored in element i to segment stored in element j
 end -- for i
end -- function sbands_apply_ring

function sbands_apply_grid(structure_changes,sbands_pitch,sbands_strength)
-- using list structure_changes
  local i
  for i=1,(#structure_changes-1) do
  -- by variable i (origin segment),
  -- cycle from "first element" to "second last element" in list structure_changes
  -- giving segments which have been found
      local j
      for j=(i+1),#structure_changes do
      -- by variable j (target segment),
      -- cycle from "element behind i" to "last element" in list structure_changes
      -- giving other segments which have been found
          band.AddBetweenSegments2(structure_changes[i],structure_changes[j],sbands_pitch,sbands_strength)
          -- band segment stored in element i to segment stored in element j
      end -- for j
  end -- for i
end -- function sbands_apply_grid

function band.AddBetweenSegments2(i,j,sbands_pitch,sbands_strength)
-- i:               origin segment index
-- j:               target segment index
-- sbands_pitch:    add this to measured distance, giving band length
-- sbands_strength: strength of bands

 if (math.abs(j-i))>1
 -- bands not directly near each other?
    then local band_GetCount1= band.GetCount()
         band.AddBetweenSegments(i,j)
         -- band segment i to segment j
         local band_GetCount2= band.GetCount()

         if band_GetCount2>band_GetCount1
         -- has band been added?
            then local length= structure.GetDistance(i,j)+sbands_pitch
                 if length<0
                    then length= 0
                         -- to prevent errors
                 end -- if length
                 band.SetGoalLength(band_GetCount2,length)
                 -- set length of applied band to measured distance (scaffolding)
                 -- +/- sbands_pitch
                 band.SetStrength(band_GetCount2,sbands_strength)
                 -- set strength of applied band to sbands_strength
                 print('#'..band_GetCount2..': idx'..i..':idx'..j..' l:'..length..' s:'..sbands_strength)
         end -- if band_GetCount2>
 end -- if >1
end -- function band.AddBetweenSegments2

-- get list containing those segments where ss changes occur
-- and remove duplicate entries:
structure_changes= structure_changes_find({first=true;last=true})
-- first=true: generally add first segment
-- last= true: generally add last  segment

-- show results:
structure_changes_show(structure_changes,
                       {freeze=true;
                        -- activate freezing?
                        freeze_invert=false;
                        -- invert freezing?
                        sbands=false;
                        -- activate bands?
                        sbands_mode="ring";
                        -- band mode?
                        sbands_pitch=0;
                        -- change segment distance by?
                        sbands_strength=1}
                        -- band strength?
                      )

-- you should activate either freeze or bands:
-- freeze= true:        freeze complete puzzle and unfreeze detected segments (detected segments serve as "ankles")
-- freeze_invert= true: invert freezing

-- sbands= true:        band detected segments with each other                (detected segments serve as scaffolding nodes)
-- sbands_mode= "grid": scaffold all detected segments with each other
-- sbands_mode= "ring": scaffold all detected segments with next only

-- sbands_pitch:        add this value to measured segment distance, giving band length 
-- sbands_pitch =0:     fix    seg's distances, how they are
-- sbands_pitch >0:     change seg's distances (expand   puzzle)
-- sbands_pitch <0:     change seg's distances (compress puzzle)

-- sbands_strength:     strength of scaffolding

Comments

[Crashguard303]

…is here:

pastebin.com

http://pastebin.com/pkStGRWm