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782: De-novo Freestyle 30: Hand-folding Round

Closed since over 12 years ago

Intermediate Overall Prediction Hand-Folding

Summary

Created
September 20, 2013
Expires
Max points
100
Description

We are giving you another currently unsolved protein as an extended chain. This round only GUI scripts are allowed and sharing has been disabled. After this puzzle expires, the puzzle will be re-posted and LUA scripts and sharing will be allowed. You'll be able to load in your solutions from this puzzle and use scripting and sharing.

Top groups

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    1. Contenders
    100 pts. 10,234
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  3. Avatar for Go Science 3. Go Science 68 pts. 10,056
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  6. Avatar for Deleted group 6. Deleted group pts. 9,950
  7. Avatar for Beta Folders 7. Beta Folders 27 pts. 9,930
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  9. Avatar for Russian team 9. Russian team 16 pts. 9,829
  10. Avatar for L'Alliance Francophone 10. L'Alliance Francophone 12 pts. 9,783
  1. Avatar for retiredmichael 31. retiredmichael Lv 1 53 pts. 9,703
  2. Avatar for bobcat 32. bobcat Lv 1 52 pts. 9,685
  3. Avatar for goastano 33. goastano Lv 1 51 pts. 9,670
  4. Avatar for Mr_Jolty 34. Mr_Jolty Lv 1 50 pts. 9,666
  5. Avatar for jamiexq 35. jamiexq Lv 1 49 pts. 9,666
  6. Avatar for meatexplosion 36. meatexplosion Lv 1 48 pts. 9,661
  7. Avatar for martinzblavy 37. martinzblavy Lv 1 46 pts. 9,640
  8. Avatar for pvc78 38. pvc78 Lv 1 45 pts. 9,629
  9. Avatar for gmn 39. gmn Lv 1 44 pts. 9,627
  10. Avatar for lilbitnerdy 40. lilbitnerdy Lv 1 43 pts. 9,606

Comments

bkoep Staff Lv 1

We're still waiting on the secondary structure predictions for this protein. Check back later for updates!

bkoep Staff Lv 1

SPILPKAENVDSICIDFTNSIQKIYDDSESIQKILSEIATGKRTEKQSIQDYPSAEEYGTINIENNGGMTTMFYYEENGKYYIECPYKGIYEIENNFEDMI

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Isoleucines at residues 13 and 25 are highly predicted to be part of a sheet. However, the Isoleucines at residues 31 and 38 are predicted to be part of a helix!